Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1046 ATGGCAGCGTGCATAATCACGGTTTCACAGGACGGAACCGCTGATTTCCTAACGGTGCAGGCGGCGATCGACGCCGTGCCGCTTGGCAACATTCGCCGGACGGTGATTCGGGTCTCGCCGGGAATCTACCGGCAGCCGGTGTACATCCCCAAGACCAAGAATTTCATCACTCTCGCTGCTCTGTCCCCTGAGGACACTGTGCTTACCTGGAACAACACTGTCTCCGGAATCAATCACCATCAACCTGCGAGGATAATAGGAACTGGGACCTTCGGTTGTGGAAGTACCATTGTGGAAGGGGAGGACTTTATTGCTGAGAATATTACTTTTGAGAATTCTGCCCCTAAGGGCTCAGGTCAAGCAGTTGCAATTAGAGTAACAGCGGATCGATGTGCCTTCTACAATTGTAGGTTCCTTGGATGGCAGGACACGTTGTACTTACATTACGGTAAACAATATTTGAAAGATTGTTACATTGAAGGAAGTGTGGACTTCATCTTTGGCAATAGCACTGCACTTTTGGAGCATTGTCATATCCACTGCAAGTCTGAGGGCTTCATAACTGCACAGAGCAGAAAATCATCACAGGAAACAACTGGTTATGTATTCTTAAGATGCATTATCACAGGTAATGGAGGAAAATCGTATGCATATCTTGGACGACCGTGGGGCCCTTTTGGAAGGGTGGTCTTTGCATACACTTACATGGATCAGTGTATAAGACATGTTGGCTGGGATAACTGGGGGAACATGGAGAACGAGAGAAGTGCTTGCTTTTATGAATACAGGTGTTTTGGACCTGGTTGCTGTCCATCGAAGCGAGTAATATGGTGTAGAGAATTGGTGGATGAAGAAGCTATGCAGTTCGTCACGCATCCTTTCATCGATCCCGAACCAGAGAAACCTTGGCTTGCTCAAAGGATGGCCCTCAGGATTCCGTATTCTGCATGA 951 0.4774 MAACIITVSQDGTADFLTVQAAIDAVPLGNIRRTVIRVSPGIYRQPVYIPKTKNFITLAALSPEDTVLTWNNTVSGINHHQPARIIGTGTFGCGSTIVEGEDFIAENITFENSAPKGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSEGFITAQSRKSSQETTGYVFLRCIITGNGGKSYAYLGRPWGPFGRVVFAYTYMDQCIRHVGWDNWGNMENERSACFYEYRCFGPGCCPSKRVIWCRELVDEEAMQFVTHPFIDPEPEKPWLAQRMALRIPYSA* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1046 316 Pfam Pectinesterase 6 296 IPR000070 GO:0030599|GO:0042545
Vra4g1046 316 ProSitePatterns Pectinesterase signature 2. 159 168 IPR033131 -
Vra4g1046 316 SUPERFAMILY Pectin lyase-like 2 298 IPR011050 -
Vra4g1046 316 Gene3D - 3 310 IPR012334 -
Vra4g1046 316 PANTHER PECTINESTERASE 1 315 - -
Vra4g1046 316 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1046 Vra-Chr4 17682091 17685616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1046 5 309 Carbohydrate Esterase AT5G47500 38.095 2.75e-69 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1046 K01051 - gmx:100786786 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1046 4 17682091 17685616 Vra4g1046 4 17682091 17685616 ECH