Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1042 ATGATGGAAGGAAGATTATCAGGTGTGAGGAAAGGAGCATGGAGTCAAACTGAAGATGAGCTTCTCAGAGAATGCGTGCAACTCTATGGCGAAGGAAAGTGGCATCTTGTTCCTCAAAGAGCAGGGTTGAACAGATGCAGGAAGAGTTGTAGACTGAGATGGTTGAACTATTTGAAACCAAATATCAAGAGAGGGGATTTCGGTGAAGACGAGGTCGATTTGATGATCAGATTGCATAAGCTATTGGGGAACAGATGGTCTCTGATTGCAGGAAGACTTCCGGGAAGAACTTCAAACGATGTGAAGAATTACTGGAACACCAACGTGCGTCGCAAAGTACAATCTCACAACAGAGATGAGGAGAACAACAACAACAACAACGTCAAAGAATCCGAAAGAACTTGGAAACCCCACCAAGTTATAAAGCCTGTGCCTCGAGCTTTGACAAAAGCATCGTCCATGGTGCATGGGAAATCGATGAGCAGTTCGAAAGTTGGTGTTAGTGAAGGAGTTTCAGCAGGGTGTGAGAATTGGTGGGAAACTCTGTTAGATGATAAGGAAGACAACATTACGGTTAACAACAGCACGTGCTTCCCTGTTGGGAAAGATGGATCATTTGAGCTTTGGAATGAAGAACTTGACTCCATTGCTTCTGAATTTTTTGCAGAAGCTGAAACATGGAGCGACTTTTTTCTTAATTAA 702 0.433 MMEGRLSGVRKGAWSQTEDELLRECVQLYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLKPNIKRGDFGEDEVDLMIRLHKLLGNRWSLIAGRLPGRTSNDVKNYWNTNVRRKVQSHNRDEENNNNNNVKESERTWKPHQVIKPVPRALTKASSMVHGKSMSSSKVGVSEGVSAGCENWWETLLDDKEDNITVNNSTCFPVGKDGSFELWNEELDSIASEFFAEAETWSDFFLN* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1042 233 Pfam Myb-like DNA-binding domain 64 107 IPR001005 -
Vra4g1042 233 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Vra4g1042 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 62 IPR017930 -
Vra4g1042 233 MobiDBLite consensus disorder prediction 112 133 - -
Vra4g1042 233 SMART sant 10 60 IPR001005 -
Vra4g1042 233 SMART sant 63 111 IPR001005 -
Vra4g1042 233 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Vra4g1042 233 Gene3D - 65 139 - -
Vra4g1042 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 113 IPR017930 -
Vra4g1042 233 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 8 148 - -
Vra4g1042 233 SUPERFAMILY Homeodomain-like 8 105 IPR009057 -
Vra4g1042 233 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 8 148 - -
Vra4g1042 233 Gene3D - 11 63 - -
Vra4g1042 233 MobiDBLite consensus disorder prediction 111 133 - -
Vra4g1042 233 CDD SANT 69 109 IPR001005 -
Vra4g1042 233 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Vra4g1042 233 CDD SANT 13 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1042 Vra-Chr4 17658816 17659958 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1042 8 153 MYB Transcription Factor Family AT1G66370 60.274 1.48e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra4g1042 Myb_DNA-binding 2.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1042 - K16166 pvu:PHAVU_008G038600g 379.793