Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1040 ATGGGACGATCACCATGCTGTGACAAGGTGGGGCTAAAGAAAGGGCCATGGACTCCAGAGGAAGATCAGAAGCTCTTGGCATATATTGAAGAACACGGCCACGGAAGCTGGCGTGCTTTGCCAGCAAAAGCTGGACTTGAGAGGTGTGGCAAGAGCTGCAGATTGAGATGGACTAATTATCTAAGGCCTGATATTAAGAGGGGAAAGTTCAGTATGCAAGAAGAACAAACCATCATTCAACTCCATGCACTCTTAGGGAACAGGTGGTCGGCAATAGCAACACATTTGCCAAAGAGAACAGATAATGAGATAAAGAACTACTGGAACACGCATCTGAAGAAAAGGTTAGACAAAATGGGAATTGATCCGGTGACTCACAAGCCCAAGAACGATGCCATTCTCTCCACTGAGGCTCATTCCAAGAGTGCATCCAACCTAAGCCACATGGCTCAGTGGGAGAGTGCCAGACTCGAAGCAGAAGCAAGATTGGTCAGAGAATCAAAACTACGTACCTCACATTCATCATCACCCTCATTGCAGCATTCTCTAATTGGCACTTCTGCATCATCATCATCGTCTTCAGCTCCAGTATTACCCTCCTCAACACGTTCTCTTGATCACGCTTGGAACAATGGTAGTAGTACCAGTACGGTTGCAACCAGGATCAGTGACCTTGAGTCCCCTACTTCTACCTTATCTGAGAACAATGCACCACCAGTTATGACTAGTGTGATTGAGTTTGTTGGTTCTTCTGAGAGAGCGATGGTGAAGGAAGAAGGAGAGCGAGAATGGAACAAAGTTTTTCATGAAAGCTCCACCCATTTGGGAGAATACAAAGATGGCATGGAGAATTCCATGCCCTTCACGTCTAGTCTGCATGAGTTGACAGTGAGCATGGCAACCACGTGGGGTTCCGGCACTACCAGTGCACATGAACATGGACATGGACATGGACATGTTTCTGAGGAGGGATTCACCAACCTTTTACTGAATTCTAATTCCGATCAGCGGAGTTTGTCGCCGGAGGGTGGTGGAGAGTCTAATAATAATTGTGTGGGTAATGGTAGTGATGGTCATAACAATGGTAACGATAACGAGTTATACGAAGATAACAAGATGTATTGGAACAGCATTCTTAATTTGATGAACTGTTCTTCCCCTTCGAATTCACCCATGTTCTGA 1182 0.4577 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLERCGKSCRLRWTNYLRPDIKRGKFSMQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLDKMGIDPVTHKPKNDAILSTEAHSKSASNLSHMAQWESARLEAEARLVRESKLRTSHSSSPSLQHSLIGTSASSSSSSAPVLPSSTRSLDHAWNNGSSTSTVATRISDLESPTSTLSENNAPPVMTSVIEFVGSSERAMVKEEGEREWNKVFHESSTHLGEYKDGMENSMPFTSSLHELTVSMATTWGSGTTSAHEHGHGHGHVSEEGFTNLLLNSNSDQRSLSPEGGGESNNNCVGNGSDGHNNGNDNELYEDNKMYWNSILNLMNCSSPSNSPMF* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1040 393 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 387 - -
Vra4g1040 393 CDD SANT 69 112 IPR001005 -
Vra4g1040 393 MobiDBLite consensus disorder prediction 332 362 - -
Vra4g1040 393 SMART sant 13 63 IPR001005 -
Vra4g1040 393 SMART sant 66 114 IPR001005 -
Vra4g1040 393 CDD SANT 16 61 IPR001005 -
Vra4g1040 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vra4g1040 393 Gene3D - 69 143 - -
Vra4g1040 393 MobiDBLite consensus disorder prediction 170 220 - -
Vra4g1040 393 Gene3D - 13 66 - -
Vra4g1040 393 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 387 - -
Vra4g1040 393 MobiDBLite consensus disorder prediction 168 220 - -
Vra4g1040 393 MobiDBLite consensus disorder prediction 332 365 - -
Vra4g1040 393 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vra4g1040 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vra4g1040 393 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vra4g1040 393 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vra4g1040 393 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra4g1040 393 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1040 Vra-Chr4 17630441 17633543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1040 1 393 MYB Transcription Factor Family AT3G01140 52.475 4.71e-116 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra4g1040 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1040 K09422 - gmx:100794047 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1040 4 17630441 17633543 Vra4g1040 4 17630441 17633543 ECH