Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1039 ATGGAGAACGTTTACAAACCAAGTAAGGAAAATCAGAAGTTTAACTTCCCAACTGGTTTTAGATTTCATCCAACCGACGAGGAGTTGATAAAAGACTACCTCATAAAGAAGGTTGCTGACAACTGTTTCTGTGCTGTGGCCATTGCTGAGGTTGATTTGAACAAGTGTGAACCATGGAATTTGCCTGCATTGGCTAAAATGGGTGAAACTGAGTGGTATTATTTCTCCGTGAGGGACAAAAAGTACCCAACTGGTTTAAGGGCTAATAGGGCCACTGAGGCTGGTTATTGGAAAGCCACAGGAAAAGACAAGGAGATAATAGCGGAAAATGCACTTATTGGGCGGAAGAAAACTTTAGTTTTCTACAAGGGAAGAGCTCCAAGAGGTGAAAAGACAAACTGGGTTATGCATGAATATAGGTTGGAAGGGAAACAGAATCAATATCAATATGCTAAGGGCGAATGGGTGGTGTGCAGAGTCTTTGAGAAGGGTCCTTCTGGGAGGAAATTGAACGTTAGGAGGTTGAATTCCTCTGGAAACGAATCATCATCACCTTCTTCTCTGTTGCCTCCTCTGATGGATTCTTCTCCTAACAACAGTGAAGCAAGAACCACTGCTGGTCAGTTGTCTCAGGTGACCAGCCGTGATCCAAATTATACTGTGGATCAGAAGAACACACATGATGGCATTGTTGAAATAATGGAAACTCCTATTCTGAACTTGTCATCCTCTGCAACTCCTTTTGCTGTTTACCCTTTTGGAAAACCAACCCTTTCAGTCCCAGACCAACCAGCCCAGATTGCAAACCAAATTGGGAACTCACAGTACCCAGATTATTGTTATATGCCTCAAGAACAGTCCTTGAAGATGCTGATGACTGGAAACCATGAACCAAATGCAAAGCAAATTCAGAAAACAGAGTTTTCTGATGGAAGAGACTTTGATGCTGATATAGACACAATGCTTGAGAATCAAGAAATTGATCAGCTTGTGCAGGGCATGTGGACACCGATTGCATGTGGAATTACTGAAGAAGGTTAA 1041 0.4236 MENVYKPSKENQKFNFPTGFRFHPTDEELIKDYLIKKVADNCFCAVAIAEVDLNKCEPWNLPALAKMGETEWYYFSVRDKKYPTGLRANRATEAGYWKATGKDKEIIAENALIGRKKTLVFYKGRAPRGEKTNWVMHEYRLEGKQNQYQYAKGEWVVCRVFEKGPSGRKLNVRRLNSSGNESSSPSSLLPPLMDSSPNNSEARTTAGQLSQVTSRDPNYTVDQKNTHDGIVEIMETPILNLSSSATPFAVYPFGKPTLSVPDQPAQIANQIGNSQYPDYCYMPQEQSLKMLMTGNHEPNAKQIQKTEFSDGRDFDADIDTMLENQEIDQLVQGMWTPIACGITEEG* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1039 346 Gene3D NAC domain 25 166 IPR036093 GO:0003677|GO:0006355
Vra4g1039 346 SUPERFAMILY NAC domain 13 163 IPR036093 GO:0003677|GO:0006355
Vra4g1039 346 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Vra4g1039 346 ProSiteProfiles NAC domain profile. 16 163 IPR003441 GO:0003677|GO:0006355
Vra4g1039 346 PANTHER ANAC079/ANAC080/ATNAC4 PROTEIN 9 331 - -
Vra4g1039 346 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 331 - -
Vra4g1039 346 MobiDBLite consensus disorder prediction 171 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1039 Vra-Chr4 17607778 17610314 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1039 15 204 NAC Transcription Factor Family AT5G07680 63.212 3.21e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra4g1039 NAM 5.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1039 - - gmx:100782172 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1039 4 17607778 17610314 Vra4g1039 4 17607778 17610314 ECH
Vra4g1039 4 17607778 17610314 Vra1g0257 1 3359007 3360747 ECH