Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1035 ATGTTGACTCTCCTCTATTTATTCCTTTCCAATTTCCCCTTCCATTTCCACAAACAACTTCCTTCAAGGAAAATGGCTCTTCTTGGATTTCTTCTGGGACTTTTCTACATGGTGTCACATGTCAAGGGCTACGGGGGTTGGACCAATGCACACGCCACTTTCTATGGAGGAGGTGACGCTTCTGGGACAATGGGAGGGGCCTGTGGTTATGGAAATCTGTATAGCCAGGGTTATGGAACTGATACAACAGCACTGAGCACTGCACTGTTCAACAATGGTCTGAGCTGTGGTGCATGCTTTGAAATAAAATGTGTGAATGACCCACAATGGTGTCTTCCTGGATCCATCGTTGTCACTGCCACAAATTTCTGTCCACCCGGTGGTTGGTGTGACCCTCCCCAACACCACTTTGATCTGTCTCAACCTGTTTTCCAGCACATTGCTCAATATAGGGCCGGAATTGTTCCTGTAGTTTACAGAAGGGTGAGATGCAGGAGAAAGGGTGGAATCAGGTTCACCATCAATGGCCACTCTTACTTCAATTTAGTCCTTGTGACCAATGTTGGAGGTGCTGGTGATGTGCATTCTGTATCCATCAAAGGGTCAAGAACCAGATGGCAAGCCATGTCTAGGAACTGGGGGCAAAACTGGCAAAGCAACTCCTACTTGAATGGGCAAAGCCTTTCCTTTGTAGTGACCACTGGCAACGGACACAGTGTGGTGTCATACAATGTTGCTCCAGCTGGTTGGTCCTTTGGGCAGACCTACACTGGAAGGCAGTTCAACTACTAA 792 0.476 MLTLLYLFLSNFPFHFHKQLPSRKMALLGFLLGLFYMVSHVKGYGGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTDTTALSTALFNNGLSCGACFEIKCVNDPQWCLPGSIVVTATNFCPPGGWCDPPQHHFDLSQPVFQHIAQYRAGIVPVVYRRVRCRRKGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSVVSYNVAPAGWSFGQTYTGRQFNY* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1035 263 SMART dpbb_1 82 159 IPR007112 -
Vra4g1035 263 Gene3D - 36 165 IPR036908 -
Vra4g1035 263 PRINTS Expansin signature 77 91 IPR002963 GO:0009664
Vra4g1035 263 PRINTS Expansin signature 104 115 IPR002963 GO:0009664
Vra4g1035 263 PRINTS Expansin signature 116 126 IPR002963 GO:0009664
Vra4g1035 263 PRINTS Expansin signature 127 144 IPR002963 GO:0009664
Vra4g1035 263 PRINTS Expansin signature 144 157 IPR002963 GO:0009664
Vra4g1035 263 PRINTS Expansin signature 168 180 IPR002963 GO:0009664
Vra4g1035 263 PRINTS Expansin signature 180 201 IPR002963 GO:0009664
Vra4g1035 263 PRINTS Expansin signature 215 236 IPR002963 GO:0009664
Vra4g1035 263 PRINTS Expansin signature 244 260 IPR002963 GO:0009664
Vra4g1035 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 258 IPR007117 -
Vra4g1035 263 PRINTS Expansin/Lol pI family signature 46 61 IPR007118 GO:0005576
Vra4g1035 263 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Vra4g1035 263 PRINTS Expansin/Lol pI family signature 86 104 IPR007118 GO:0005576
Vra4g1035 263 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Vra4g1035 263 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Vra4g1035 263 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576
Vra4g1035 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 65 169 IPR007112 -
Vra4g1035 263 Pfam Expansin C-terminal domain 170 247 IPR007117 -
Vra4g1035 263 SUPERFAMILY Barwin-like endoglucanases 46 187 IPR036908 -
Vra4g1035 263 PANTHER EXPANSIN 21 262 - -
Vra4g1035 263 Pfam Lytic transglycolase 82 159 IPR009009 -
Vra4g1035 263 SUPERFAMILY PHL pollen allergen 166 258 IPR036749 -
Vra4g1035 263 Gene3D - 169 261 IPR036749 -
Vra4g1035 263 PANTHER EXPANSIN-A15 21 262 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1035 Vra-Chr4 17563815 17565420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1035 24 261 Expansin Gene Family AT2G03090 77.823 1.44e-138 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1035 K20628 - gmx:100791784 515.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1035 4 17563815 17565420 Vra3g1060 3 10799326 10801564 ECH
Vra4g1035 4 17563815 17565420 Vra4g1035 4 17563815 17565420 ECH
Vra11g1246 11 14490255 14491754 Vra4g1035 4 17563815 17565420 ECH