Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1020 ATGTGGCCCATGCTATTGACAGCAAAAGTTAGTTCCTCCAAGAAAGTGAAGAATTCCGAAAAACATTCCAACAATTCATCCGTGAATGTGCCTTTAGTAGCCGATCATGGCGAGTTGGCTCAGCATAAAACCATAACGTATCCTCCTTCTGCACAAGACACTGTATCCTTCTTTCATACTTGTCTTAACGGACTCAATGCAATATCAGGTGTAGGTATACTCTCAGTTCCTTACGCTCTTGCATCTGGAGGATGGTTAAGCTTGCTTCTTTTGTTTGGTATTGCCACTGCAGCACTTTACACGGGCACGTTAATAAAAAGATGCATGGATATGAATACGAATATCAGAAGCTATCCTGATATAGGTGAACTTGCATTTGAAAAAACAGGAAGGATAATAGTGTCAGTATCCATGTATACTGAACTTTATTTAGTTTCAATAGGATTTTTGATTCTTGAAGGTGATAACTTGAGTAACTTGTTTCCTAATGCGAAGGTTCAGATAGCTGGCTTAGCTATTGCAGGAATGCTTGTCCATTGGAATGGTCTTCCCACAGCTGTTAGTTTGTATGCCTTCTGTTATTGTGCACATCCTCTGTTTCCGACATTGTACAATTCGATGACAAACAAACATCGCTTCACTAATGTCTTAATTGGATGTTTTCTCTTAACCACTGTGGGCTATGCATCCATGGCTACAGTGGGTTATTTAATGTTTGGTGAAGAGGTTGAGTCACAAGTAACACTAAACCTACCTCTGAACAAAATTAGCTCAAAAGTAACAATATACACAACGTTGATGAATCCCATATCGAAGTTTGCTTTGATGGCAACACCTATTACGAATGCTTTAAAAGACTTGCTTCCAAGGAGGTACAGAAATAGGGTAACGAGCATCTTAGTTAGCACACTGTTGGTAATGAGCACCACCATTGCTGCCCTTGTTCTTCCTTTCTTTGGGTCTCTGATGTCACTGGTTGGAGCCTTTCTAAGTGTCACAGCTTCTATTCTGCTTCCATGCTTGTGCTACTTCAAGATTTCAGACACTTATAGGAACTTTGGGTGTGAGAGTGTAGTCATAGTGATACTAATAATGGCAGCTTTAGCAATGGCAATATCTGGGACCTATACTTCTTTCATGGAAATAGCACACCACCTGGTTCAACTATGA 1170 0.4017 MWPMLLTAKVSSSKKVKNSEKHSNNSSVNVPLVADHGELAQHKTITYPPSAQDTVSFFHTCLNGLNAISGVGILSVPYALASGGWLSLLLLFGIATAALYTGTLIKRCMDMNTNIRSYPDIGELAFEKTGRIIVSVSMYTELYLVSIGFLILEGDNLSNLFPNAKVQIAGLAIAGMLVHWNGLPTAVSLYAFCYCAHPLFPTLYNSMTNKHRFTNVLIGCFLLTTVGYASMATVGYLMFGEEVESQVTLNLPLNKISSKVTIYTTLMNPISKFALMATPITNALKDLLPRRYRNRVTSILVSTLLVMSTTIAALVLPFFGSLMSLVGAFLSVTASILLPCLCYFKISDTYRNFGCESVVIVILIMAALAMAISGTYTSFMEIAHHLVQL* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1020 389 PANTHER AMINO ACID TRANSPORTER AVT1J 174 382 - -
Vra4g1020 389 PANTHER AMINO ACID TRANSPORTER AVT1J 53 175 - -
Vra4g1020 389 Pfam Transmembrane amino acid transporter protein 181 378 IPR013057 -
Vra4g1020 389 Pfam Transmembrane amino acid transporter protein 54 164 IPR013057 -
Vra4g1020 389 PANTHER OS05G0424000 PROTEIN-RELATED 174 382 - -
Vra4g1020 389 PANTHER OS05G0424000 PROTEIN-RELATED 53 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1020 Vra-Chr4 17433607 17436932 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1020 56 382 Amino Acid or Auxin Permease AAAP Family AT3G28960 46.392 1.29e-111 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1020 K15015 - gmx:100794374 523.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1020 4 17433607 17436932 Vra4g1020 4 17433607 17436932 ECH