Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1019 ATGTCAAAAAAACTTTCGTACAATCCTTCCTTTAGGGTTCCTTTACTTCTCAATGATGAGGAGAAAGCCATTGCCTCTTATCCTTCTGATATAAAAACTGTATCCTTCTTTCGTACATGCCTTAATGGACTCAATACAATAGCAGGTGTTGGCATACTCTCAGTTCCTTATGCTCTTGCAACTGGAGGTTGGTTAAGCTTGGTTCTTTTGTTTTCCATTGCCGCCGCTGCATTTTACACGGGTCTTCTGATTAAAAGATGCATGGATAAGGACTCAAACATTAGAACCTATCCTGATATAGGGGAACTTGCATTTGGAAAGACAGGAAGACTGATAGTGTCAATATCCATGTACACGGAACTATATCTCGTTTCAATAGGATTCTTGATTCTAGAAGGTGATAACTTGAGTAACATATTCTCCATTGGAGAGGTTCACATAGCAGGCTTAGCAATTGGTGGAAAGCAATTACTTGTGATTATGGTTGCCCTTATCATCTTGCCTACAGTTTGGTTGGACAACTTGAGTCTACTCTCTTATGTATCTGCAAGTGGAGTCTTTGCTTCTGTTCTCATCATCATTTCAATAACATGGACTGCAACATTTGATGGAGTTGGTTTTCATAATAAAGGGACTCTCGTCCATTGGAATGGTCTCCCTACAGCTGTTAGCTTGTATGCCTTCTGTTATTGCGCACATCCTGTCTTTCCCACTTTGTACAATTCGATGACAAACAAACATCAGTTCTCTAACGTCTTATTAGTATGTTTTCTCCTAACCACTGTGGGTTATGCATCCATGGCTATAGTGGGTTATTTAATGTTTGGTGACGAGGCTCAATCTCAAGTAACATTGAACTTGCCTTTGGACAAAATCAGCTCAAAATTAGCAATATACACAACCTTGGTGAATCCCATATCCAAGTTTGCTTTGATGGCAACACCTATTACGAATGCTTTGAAAGACTTACTTCCAAAGACGTACAAGAATAGGGTGACGAGCTTCTTACTGAGCACACTGTTGGTATTGAGCACTACCGTTGTTGCCCTTGCCGTCCCTTTCTTTGGGTCTCTGATGTCACTGGTTGGAGCCTTTTTAAGTATCACAACTTCTATTCTGCTTCCGTGCTTGTGCTACTTGAAGATTTCGGGCACTTACAGAAAATTTGGGTGTGAGACGGTAGCCATAGTGATAATAATAGTGGCAGCTATTGTAATGACAATTTCAGGAACCTACATCTCTCTCATGGAAATAGTTCACAATTTATAA 1269 0.4011 MSKKLSYNPSFRVPLLLNDEEKAIASYPSDIKTVSFFRTCLNGLNTIAGVGILSVPYALATGGWLSLVLLFSIAAAAFYTGLLIKRCMDKDSNIRTYPDIGELAFGKTGRLIVSISMYTELYLVSIGFLILEGDNLSNIFSIGEVHIAGLAIGGKQLLVIMVALIILPTVWLDNLSLLSYVSASGVFASVLIIISITWTATFDGVGFHNKGTLVHWNGLPTAVSLYAFCYCAHPVFPTLYNSMTNKHQFSNVLLVCFLLTTVGYASMAIVGYLMFGDEAQSQVTLNLPLDKISSKLAIYTTLVNPISKFALMATPITNALKDLLPKTYKNRVTSFLLSTLLVLSTTVVALAVPFFGSLMSLVGAFLSITTSILLPCLCYLKISGTYRKFGCETVAIVIIIVAAIVMTISGTYISLMEIVHNL* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1019 422 PANTHER OS05G0424000 PROTEIN-RELATED 32 419 - -
Vra4g1019 422 PANTHER AMINO ACID TRANSPORTER AVT1J 32 419 - -
Vra4g1019 422 Pfam Transmembrane amino acid transporter protein 33 412 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1019 Vra-Chr4 17422717 17424351 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1019 20 419 Amino Acid or Auxin Permease AAAP Family AT3G28960 57.606 6.92e-171 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1019 K15015 - gmx:100794374 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1019 4 17422717 17424351 Vra4g1019 4 17422717 17424351 ECH