Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1017 ATGGAAGGTACCAGCCAAAACACGTTTACCTTCATAACCACCTCCATCGACGCTCCAAGTCCAAGCACCCCTGAGATATCACCATCTCCTTCTGCTCTTTCAGTACTCGCACAAACTTACCCTCCTGGTTTTTCCAGAAAGGTGTTTGCGGAGGTTATCGGAACGTTTCTGTTGGTGTTCGTCGGAAGTGGTTCTGCCGGTCTCAGTGTTATTGATGAGAGCAGAGTGTCAAAGCTCGCAGCTTCAATTGCTGCAGGACTCATCGTCACAGTCATGATTTACTCAATTGGACACATTTCTGGAGCACACATGAACCCTGCGGTTTCCCTTGCCTTTGCTGCGGTCAGGCATTTTCCGTGGCCACAGGTCCCGTTTTACGTAGCAGCTCAACTCACTGGATCCATTTCTGCTTCATACACATTGCGAGAGCTTTTCCAGCCATCAAATGAAATTGGGGGAACATCACCTGCTGGATCACATATCCAAGCACTGATCGTGGAAATGGTGACTACTTTCACCATGGTGTTCATTTCCATGGCCGTGGCCACTGACACAAACGCTACAGGACAACTATCAGGAGTAGCAGTAGGTTCTTCTGTTTGCATATCAAGCATTGTTGCCGGACCAATATCGGGGGGATCAATGAACCCAGCAAGGACATTAGGTCCTGCAATTGCAACATCATCCTACAAGGGACTTTGGGTATATTTTGTTGGACCAATTACTGGGGCAGTTTTAGCAGCATGGTCTTACAACGTCATTAGGGACACGGAACACCCTGGTTTTCCATTTTCACTATCCTCCCTTTCATTCAAGGTACGCCAAAGCGTTAGTGGAACCAAAACCGACCAACGAAGCTTGGTTTGA 867 0.4787 MEGTSQNTFTFITTSIDAPSPSTPEISPSPSALSVLAQTYPPGFSRKVFAEVIGTFLLVFVGSGSAGLSVIDESRVSKLAASIAAGLIVTVMIYSIGHISGAHMNPAVSLAFAAVRHFPWPQVPFYVAAQLTGSISASYTLRELFQPSNEIGGTSPAGSHIQALIVEMVTTFTMVFISMAVATDTNATGQLSGVAVGSSVCISSIVAGPISGGSMNPARTLGPAIATSSYKGLWVYFVGPITGAVLAAWSYNVIRDTEHPGFPFSLSSLSFKVRQSVSGTKTDQRSLV* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1017 288 Pfam Major intrinsic protein 44 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g1017 288 ProSitePatterns MIP family signature. 103 111 IPR022357 -
Vra4g1017 288 SUPERFAMILY Aquaporin-like 40 260 IPR023271 -
Vra4g1017 288 Gene3D Glycerol uptake facilitator protein. 27 260 IPR023271 -
Vra4g1017 288 PANTHER MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED 36 276 - -
Vra4g1017 288 CDD MIP 46 254 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g1017 288 PRINTS Major intrinsic protein family signature 46 65 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g1017 288 PRINTS Major intrinsic protein family signature 85 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g1017 288 PRINTS Major intrinsic protein family signature 122 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g1017 288 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g1017 288 PRINTS Major intrinsic protein family signature 197 219 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g1017 288 PRINTS Major intrinsic protein family signature 234 254 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g1017 288 PANTHER AQUAPORIN NIP2-1 36 276 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1017 Vra-Chr4 17376155 17379675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1017 45 283 Major Intrinsic Protein MIP AT5G37820 46.473 3.30e-70 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1017 K09874 - gmx:100788071 454.907