Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1012 ATGGACATAACCCCAACAACAACCATAAACAACACCACTCCCAGTGCAACAACAAAATCCCCAGAACATGACACCGAAACACCCACCAGGATCAACACCCCCACCGCCACCAAAGCTTTGTCTTTCTCCAACGGGGTCCTCAAGCGACACCATCACCACCACCACCACCCCATGCCCGCCGCCGTCACCTACAAAGAATGCCTCAAAAACCACGCCGCCAACTTGGGTGGCCACGCTTTAGATGGATGCGGCGAGTTCATGCCGTCCCCCACAGCCACTGCCGCCGACCCCAGCTCCATTAAATGCGCAGCATGCGGCTGCCACCGCAACTTCCACCGCCGCGAGCCGGATGAGCCGCCCATCCCATCCACCACGCATGTGATCGAGTACCAGCCGCACCATCGCCACCACCCCCCTCCTCCGTTCCAGGCACCGGGGGCGAATCGAAGTCCGAATTCCGCATCCCCGCCGCCGATCTCCTCCTCTTACTACCCCTCCGCCCCGCACATGCTCCTTGCCCTCTCTGCCGGGCTCGCCGCTCCTCCGGAGAGCACGGCCGCACCCTCCACTGCTCTCACCAGAAAGCGCTTTAGAACCAAGTTCAGCCAGGAGCAGAAGGAGAAGATGCACAAGTTCGCTGAGAAAGTAGGATGGAAGATGCAGAAGAGAGACGAAGATTTGATTCACGAGTTTTGCAACGAGGTTGGCGTGGATAGAAGCGTTCTCAAGGTTTGGATGCACAACAACAAAAACACCTTGGCCAAAAAAGATAATAATGTTAATATTACTAGCAATGATAATATTAATGATAATGATGCAAATGGGGGTGTCAAGGGTTTTGAAGACCCTAATAGCAACATCGGTGGTGGTGGTGGTGCTGAAGATCGCGGTGAGGATCCGAGTCACAATCACTTTGGTGGGGTGAACGTTGGTGCTAATGGGTCTTCTTCTACTTCTTGA 960 0.549 MDITPTTTINNTTPSATTKSPEHDTETPTRINTPTATKALSFSNGVLKRHHHHHHHPMPAAVTYKECLKNHAANLGGHALDGCGEFMPSPTATAADPSSIKCAACGCHRNFHRREPDEPPIPSTTHVIEYQPHHRHHPPPPFQAPGANRSPNSASPPPISSSYYPSAPHMLLALSAGLAAPPESTAAPSTALTRKRFRTKFSQEQKEKMHKFAEKVGWKMQKRDEDLIHEFCNEVGVDRSVLKVWMHNNKNTLAKKDNNVNITSNDNINDNDANGGVKGFEDPNSNIGGGGGAEDRGEDPSHNHFGGVNVGANGSSSTS* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1012 319 MobiDBLite consensus disorder prediction 131 161 - -
Vra4g1012 319 Gene3D - 182 256 - -
Vra4g1012 319 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 64 115 IPR006456 -
Vra4g1012 319 MobiDBLite consensus disorder prediction 1 36 - -
Vra4g1012 319 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 194 251 IPR006455 -
Vra4g1012 319 Pfam ZF-HD protein dimerisation region 62 116 IPR006456 -
Vra4g1012 319 MobiDBLite consensus disorder prediction 276 319 - -
Vra4g1012 319 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 1 282 - -
Vra4g1012 319 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 282 - -
Vra4g1012 319 SUPERFAMILY Homeodomain-like 186 255 IPR009057 -
Vra4g1012 319 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 63 115 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1012 Vra-Chr4 17293590 17295047 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1012 1 250 ZF-HD Transcription Factor Family AT5G15210 53.175 9.11e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vra4g1012 ZF-HD_dimer 2.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1012 - - gmx:100786999 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0243 1 3132307 3133776 Vra4g1012 4 17293590 17295047 PCT