Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1011 ATGTCTATCAGAGAACAAAGTAGGGAATTTGAAGGATCGGAGAGGATGATGAGGAGAGTGATTCTGAGAAGACAGCCCCCGCGACGATGCCCGACCAACAACACGGTGACGATCGTGAGGAATGTGCAACATGGGGAGTGTCAGAGGAATCACGCGATCAATGTCGGAGGATTTGCTGTGGATGGTTGCATGGAGTTCTTTCCGAGTGGAGTAGAAGGAACTGCTGGGGCTATGATTTGTGGTGCATGTGGTTGCCACAAGAATTTCCATCGGAGGGAGATACATATAAATGTTACTTGTCACTGCAATTCTAACAGTGGATAG 324 0.4815 MSIREQSREFEGSERMMRRVILRRQPPRRCPTNNTVTIVRNVQHGECQRNHAINVGGFAVDGCMEFFPSGVEGTAGAMICGACGCHKNFHRREIHINVTCHCNSNSG* 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1011 107 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 44 93 IPR006456 -
Vra4g1011 107 PANTHER MINI ZINC FINGER PROTEIN 2 37 105 - -
Vra4g1011 107 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 37 105 - -
Vra4g1011 107 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 45 94 IPR006456 -
Vra4g1011 107 Pfam ZF-HD protein dimerisation region 42 94 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1011 Vra-Chr4 17273895 17274543 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1011 39 104 Zinc finger-homeobox gene family AT3G28917 64.179 1.31e-26 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vra4g1011 ZF-HD_dimer 6.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1011 - - vra:106758454 228.024