Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1010 ATGGGAAGACCACCTTGTTGTGACAAAGAAGGAGTCAAGAAAGGGCCTTGGACTCCTGAAGAAGACATCATTTTGGTGTCTTATATACAGGAGCATGGTCCTGGCAATTGGAGGACAGTTCCTACCAAGACAGGGTTGTCAAGATGCAGTAAGAGTTGTAGACTTAGATGGACAAATTACCTGCGCCCAGGAATCAAACGTGGTAACTTCACAGAACAGGAGGAGAAGATGATTATCCACCTTCAAGATCTTTTAGGGAACAGATGGGCTGCAATAGCTTCATACCTTCCACAGAGAACGGATAATGACATAAAGAACTATTGGAACACCCATTTAAGAAAGAAGTTGAAAAAGTTGCAAACAGGTTGTGAAGGTAGCTTGGGAGATTCGTTTTCAGGATCAAGGCAAATTCCTAGGGGCCAGTGGGAAAGAAGGCTCCAAACTGATATCCAAATGGCAAAGAGAGCTCTCAGTGAAGCTCTTTCCCCAGAGAAGCCATCTTGTTTATCTGGATCAAACTCAAACCCTTCAGAGAGTAGCAGTTCCTTCTCTTCCACCAAACCATCTCAATCATTGTGCTATGCTTCCAGTGCTGAGAACATAGCTCGTATGTTGAAGGGTTGGATGAAAAACCCTCCAAAGTCCTCAAGAACTAACTCATCTGTTACTCAGAACTCCTTCAACAACTTAGTCGCAGCTGGTGCTGATACTGCTTCTAGTGGAGCAAAGGGACCCAACAGTGTTGAATTGTCTCAGAATTTTGAATCCCTGTTTGAGTTTCATCAGTCTTTTGATTCCTCAAACTCTGATGAATTGTCTCAGTCGTTTTCTCCCGAAGAAAATAAGCCTGATATTGGTGCAGAAATAATGCCCTTCTCTTTGCTTGAGAAATGGCTTCTTGATGAGGCTGCTTGCCAAGAGAAAGTTGGTTGTGCTGATGCCAAGTTTTTCTAA 954 0.4329 MGRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPGNWRTVPTKTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLRKKLKKLQTGCEGSLGDSFSGSRQIPRGQWERRLQTDIQMAKRALSEALSPEKPSCLSGSNSNPSESSSSFSSTKPSQSLCYASSAENIARMLKGWMKNPPKSSRTNSSVTQNSFNNLVAAGADTASSGAKGPNSVELSQNFESLFEFHQSFDSSNSDELSQSFSPEENKPDIGAEIMPFSLLEKWLLDEAACQEKVGCADAKFF* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1010 317 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vra4g1010 317 MobiDBLite consensus disorder prediction 159 189 - -
Vra4g1010 317 CDD SANT 69 112 IPR001005 -
Vra4g1010 317 MobiDBLite consensus disorder prediction 165 189 - -
Vra4g1010 317 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 311 - -
Vra4g1010 317 CDD SANT 16 61 IPR001005 -
Vra4g1010 317 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra4g1010 317 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vra4g1010 317 SMART sant 13 63 IPR001005 -
Vra4g1010 317 SMART sant 66 114 IPR001005 -
Vra4g1010 317 Gene3D - 69 126 - -
Vra4g1010 317 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vra4g1010 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vra4g1010 317 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vra4g1010 317 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 311 - -
Vra4g1010 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vra4g1010 317 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1010 Vra-Chr4 17259439 17260986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1010 1 314 MYB Transcription Factor Family AT5G62470 51.397 7.66e-105 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra4g1010 Myb_DNA-binding 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1010 K09422 - gmx:778080 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0241 1 3063649 3065367 Vra4g1010 4 17259439 17260986 PCT