Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1008 ATGGTGCAGAGGCTCACTTATCGCAAGCGCCACAGCTATGCCACCAAATCGAATCAGCACCGGATTGTTAAGACCCCTGGTGGGAAGTTGGTGTACCAGAGCACTAAGAAGAGGGCTAGTGGACCTAAGTGTCCTGTCACTGGGAAGAGGATCCAAGGGATCCCCCACTTAAGACCTGCGGAATACAAGAGGTCTAGATTGTCTAGGAACCGCCGGACAGTTAACCGGGCCTATGGAGGTGTTTTATCTGGTGGAGCTGTTAGAGAAAGGATTATTCGGGCTTTCCTTGTTGAAGAACAGAAAATTGTGAAAAAGGTATTGAAGATCCAGAAGGCAAAAGAAAAGCAGGCTGCTAAGAGTTAA 363 0.4821 MVQRLTYRKRHSYATKSNQHRIVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQAAKS* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1008 120 ProSitePatterns Ribosomal protein L34e signature. 15 28 IPR018065 -
Vra4g1008 120 MobiDBLite consensus disorder prediction 31 50 - -
Vra4g1008 120 Pfam Ribosomal protein L34e 1 96 IPR008195 GO:0003735|GO:0005840|GO:0006412
Vra4g1008 120 Gene3D - 1 38 - -
Vra4g1008 120 PANTHER - 1 120 - -
Vra4g1008 120 Gene3D - 39 120 - -
Vra4g1008 120 PANTHER 60S RIBOSOMAL PROTEIN L34 1 120 IPR008195 GO:0003735|GO:0005840|GO:0006412
Vra4g1008 120 PRINTS Ribosomal protein L34 signature 13 26 IPR008195 GO:0003735|GO:0005840|GO:0006412
Vra4g1008 120 PRINTS Ribosomal protein L34 signature 26 43 IPR008195 GO:0003735|GO:0005840|GO:0006412
Vra4g1008 120 PRINTS Ribosomal protein L34 signature 44 54 IPR008195 GO:0003735|GO:0005840|GO:0006412
Vra4g1008 120 PRINTS Ribosomal protein L34 signature 66 88 IPR008195 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1008 Vra-Chr4 17217771 17219663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1008 1 119 Cytoplasmic Ribosomal Protein Gene Family AT1G69620 92.437 1.14e-76 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1008 K02915 - oeu:111381723 195.282