Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1007 ATGTCTAGCCGAAGATCCAGACAACATTCAGGGTCTACGAGGATCTCCGATGACCAAATCATCGAGCTTGTTTCCAAATTGCGCCAACTTGTTCCTGAGATTCGCAGTAGGCGATCTGACAAGGTTTCAGCGTCGAAGGTCCTACAAGAAACCTGCAACTACATCAGAAGCTTGCACAGAGAGGTGAGTGACTTGAGTGAGCGACTGTCTCAGTTGTTGACCACAATTGACGCTGATAGTGCTGAAGCGGGAATCATTAGGAGCCTACTTAATCAATAA 279 0.4695 MSSRRSRQHSGSTRISDDQIIELVSKLRQLVPEIRSRRSDKVSASKVLQETCNYIRSLHREVSDLSERLSQLLTTIDADSAEAGIIRSLLNQ* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1007 92 Coils Coil 55 75 - -
Vra4g1007 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
Vra4g1007 92 CDD bHLH_AtPRE_like 10 75 - -
Vra4g1007 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 18 77 IPR036638 GO:0046983
Vra4g1007 92 Pfam Helix-loop-helix DNA-binding domain 22 59 IPR011598 GO:0046983
Vra4g1007 92 Gene3D - 2 83 IPR036638 GO:0046983
Vra4g1007 92 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
Vra4g1007 92 PANTHER TRANSCRIPTION REGULATOR 1 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1007 Vra-Chr4 17196684 17198820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1007 12 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 72.500 2.83e-35 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra4g1007 HLH 4.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1007 - - gmx:100796852 172.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1007 4 17196684 17198820 Vra3g1094 3 11335996 11337600 ECH
Vra4g1007 4 17196684 17198820 Vra4g1007 4 17196684 17198820 ECH