Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1003 ATGGCCTTTCCACCTTCTCACACCTTCACGTTTCACACGAACGAAGAAGATCACCACCATCTTCCTTCAACCTCTCTCAACGCCTTTTCCTCTTTGCCACCCCAACACTTTCAAGGGGGTGCACCACCATTGATGTTGAAGCGGTCCATGTCGTTTTCAGGCATTGAGAACAAGTGCGATGAGGTGAACGGAGATGATGAGTTATCCGACGACGGGAACTTTCAGTGTGGGGAGAAGAAAAAGAGGCTGAATTTGGAACAGGTGAAGGCTCTTGAGAAGAGTTTTGAGTTGGGGAACAAGCTTGAGCCAGAAAGGAAAGTGCAGTTAGCCAAGGCTTTGGGGTTGCAACCAAGACAAATTGCCATATGGTTTCAGAATAGAAGGGCCAGATGGAAAACCAAGCAATTGGAGAAGGAATACGAAGCACTCAAGAAACAGTTTGAGGCAGCTAAGGCTAATAATGATGTTCTTAAGAGTCAGAATCAGAAATTACAGGCAGAGTTACAAGCAGTGAAAAGTAGGGGTTGGTGTGAAAATGGAATAATCAGCCTTAAGAAAGAAACCGAGGGTTCATGGAGCAATGGAAGTGATAACAGCTCAAACATTAATTTAGAACTCTCAAGAGGACCAATTATTAACAACGCTACATCTTGTCAAGCACCCTTTCCCACTAGCATCACTCAGATCTTTCAATATTCGTCAAAACCAGACTTCCATGAAGATGACTTCTGCAACGTGATTCACAACATTGCTGAACAACAAAACTTTTGGCCCTGGCCAGGTCAACAGAACCACCATTTCCATTGA 807 0.4424 MAFPPSHTFTFHTNEEDHHHLPSTSLNAFSSLPPQHFQGGAPPLMLKRSMSFSGIENKCDEVNGDDELSDDGNFQCGEKKKRLNLEQVKALEKSFELGNKLEPERKVQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEALKKQFEAAKANNDVLKSQNQKLQAELQAVKSRGWCENGIISLKKETEGSWSNGSDNSSNINLELSRGPIINNATSCQAPFPTSITQIFQYSSKPDFHEDDFCNVIHNIAEQQNFWPWPGQQNHHFH* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1003 268 SMART HOX_1 77 138 IPR001356 GO:0003677
Vra4g1003 268 ProSiteProfiles 'Homeobox' domain profile. 74 134 IPR001356 GO:0003677
Vra4g1003 268 CDD homeodomain 79 135 IPR001356 GO:0003677
Vra4g1003 268 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 268 IPR045224 GO:0003700
Vra4g1003 268 Pfam Homeodomain 79 132 IPR001356 GO:0003677
Vra4g1003 268 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 268 - -
Vra4g1003 268 Pfam Homeobox associated leucine zipper 134 173 IPR003106 GO:0006355|GO:0043565
Vra4g1003 268 PRINTS Lambda-repressor HTH signature 105 114 IPR000047 GO:0003677
Vra4g1003 268 PRINTS Lambda-repressor HTH signature 114 130 IPR000047 GO:0003677
Vra4g1003 268 Gene3D - 74 144 - -
Vra4g1003 268 MobiDBLite consensus disorder prediction 1 27 - -
Vra4g1003 268 Coils Coil 126 174 - -
Vra4g1003 268 ProSitePatterns 'Homeobox' domain signature. 109 132 IPR017970 GO:0000981|GO:0006355
Vra4g1003 268 SUPERFAMILY Homeodomain-like 73 136 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1003 Vra-Chr4 17142050 17144332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1003 1 259 Homeobox Transcription Factor Family AT3G01220 48.529 8.72e-73 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra4g1003 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1003 K09338 - gmx:100797920 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1003 4 17142050 17144332 Vra4g1003 4 17142050 17144332 ECH