Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0996 ATGTCTAGCCCTAGTAATCCTCCAGAGATAGAAGAGAAGAGAGTTACACAGGAAGATAAAGTAAAATCTGCTAAAACTGAGATGGGTGAGGTGAAGGAAGAAAATGAGAGATTGAAGAAGACGCTGGAAAGAGTAGAAAAGGATTACCAATCTCTTCAACTCCGTTTCTTTGACATCCTTCACAAAGATGTTCCAAAGAAGGGTTTTGTTACTTCCCATGAAGATCAAAGCGAAGAGCCTGAGTTTGTCTCACTTTGCCTTGGAAGGAGTCCAACGGAACCTAAGAAGGAGGCCAGAATTGGAGACTTTGACAAACCGACAGAAGATAATGTTGGACCCAACCTTACTCTTGGATTAGACTCCAAACACATGTTGGAGATGGAGATGGTGTCTGATTTGAGTCCGAGGAATAGCTCAGAAGAACCAAAGGAAACGGAAACAGAAGGAACACTGTCAACAAATCAATCAGCAAAAGTGATAAATGTAAATACCGACATTTCAGATCAAATGCCAGCCAAGAGAGCAAGAGTATCTGTGAGAGCTAGATGTGATACTCCCACGATGAATGATGGGTGTCAGTGGAGGAAATATGGACAGAAGATAGCAAAGGGAAATCCATGCCCGAGGGCATACTATCGTTGCACAGTGGCACCAACATGCCCAGTTAGGAAACAGGTACAAAGGTGTTCCCAGGACCTGTCCATCTTAATCACAACCTATGAAGGAAGCCATAACCACCCACTTCCAGTCTCAGCCACAGCCATGGCTTCAACCACTTCTGCTGCTGCATCCATGCTACTGTCAGGTTCTTCAACATCTTCAAGCCACATCTCAGCATCTTTTGGAAATGGTCTAAGTTTCAATGACCAGTTATCAAGAGCCAAACAAATCTTCTCACCTCCAAACCATGCCTCACCACATATGTTCTCAACAATCACTCTAGACCTTACTTCTTCAGCTCCTTCCTCCTCATCAACTCAATTCCACCGTGGTTTAACTTCAACCATGGCTCCAGTTTCAAACCCAAGATCCTCAGCTAGTCTCAGCTTTTGTTCACCGGACCATAACTTCATACCATCCATTTGGGGTAAGGGGTTCCATGATAATGCCACAACCACAACAGCAATTGACAAAGTCCCCACCAGGACAATTATGCATCCAAATAATTTGCAACAACATTTCTACCAACAATGCACAAAAAACGAAACTCCTTCCAGAGATGCTTTGGCAGAAACAATAACCAAAGCAATCAGCACAGACCCGAGTTTTCGTTCAGTAATAGCTGCTGCAGTTTCATCAATTGTTGAACGTGGATCAAACGGTGATAAACAACAAGTAACAGAGAATGTTCTTGGTTCAGGGTTGAACTTAAAACTTGGGGAGCATCTTCAATTGGCTTCACCTAGTCCCTTGAACCAGAACGGGAAAGGATGCTTAACAGGCTACTTAAAAAGTTTGGCCTCTAAAAGTTCCGAGGCTGGAAACTTCATTCTTCTCCAACCACCATTGCCATTTTCTTTCTCCAAGAATGTTACAAATCAGATCAACCGCTATGTTCCAGAAATGAACACGCATCACTAG 1581 0.4326 MSSPSNPPEIEEKRVTQEDKVKSAKTEMGEVKEENERLKKTLERVEKDYQSLQLRFFDILHKDVPKKGFVTSHEDQSEEPEFVSLCLGRSPTEPKKEARIGDFDKPTEDNVGPNLTLGLDSKHMLEMEMVSDLSPRNSSEEPKETETEGTLSTNQSAKVINVNTDISDQMPAKRARVSVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPTCPVRKQVQRCSQDLSILITTYEGSHNHPLPVSATAMASTTSAAASMLLSGSSTSSSHISASFGNGLSFNDQLSRAKQIFSPPNHASPHMFSTITLDLTSSAPSSSSTQFHRGLTSTMAPVSNPRSSASLSFCSPDHNFIPSIWGKGFHDNATTTTAIDKVPTRTIMHPNNLQQHFYQQCTKNETPSRDALAETITKAISTDPSFRSVIAAAVSSIVERGSNGDKQQVTENVLGSGLNLKLGEHLQLASPSPLNQNGKGCLTGYLKSLASKSSEAGNFILLQPPLPFSFSKNVTNQINRYVPEMNTHH* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0996 526 MobiDBLite consensus disorder prediction 11 34 - -
Vra4g0996 526 PANTHER WRKY TRANSCRIPTION FACTOR 72-RELATED 20 514 - -
Vra4g0996 526 ProSiteProfiles WRKY domain profile. 183 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra4g0996 526 SMART WRKY_cls 188 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra4g0996 526 Gene3D WRKY domain 173 250 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra4g0996 526 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 20 514 IPR044810 GO:0003700
Vra4g0996 526 Coils Coil 14 55 - -
Vra4g0996 526 Pfam WRKY DNA -binding domain 189 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra4g0996 526 MobiDBLite consensus disorder prediction 93 114 - -
Vra4g0996 526 MobiDBLite consensus disorder prediction 1 34 - -
Vra4g0996 526 MobiDBLite consensus disorder prediction 131 152 - -
Vra4g0996 526 SUPERFAMILY WRKY DNA-binding domain 181 249 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0996 Vra-Chr4 17085075 17087997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0996 28 517 WRKY Transcription Factor Family AT5G15130 40.892 3.17e-85 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra4g0996 WRKY 6.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0996 - - gmx:100780402 722.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0996 4 17085075 17087997 Vra7g1711 7 35704160 35708033 ECH
Vra4g0996 4 17085075 17087997 Vra4g0996 4 17085075 17087997 ECH
Vra11g1255 11 14939425 14941436 Vra4g0996 4 17085075 17087997 ECH