Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0991 ATGGAAATGATGAAACATAACATTATAGAGGTGAGCCTTGGGAAGAGCCAAATTTCCATGGCAGAAGGTGATCTTCAAGCTACACGATGTGTCAAGAGACGAAGAAGAGAGGTTGCTGCAGCAGTTAGCAGTGGTGACGATAGCCACCAGCAGCAGTTACCAAAACAACACGGTGGTGAAAATTCTACAATCAACACAACAAAGAGAAGCTCAAAATTTCGTGGTGTTAGCAGACATAGGTGGACTGGTCGGTATGAAGCTCACTTGTGGGACAAACTCTCTTGGAACATAACACAGAAGAAAAAAGGGAAGCAAGGGGCTTATGATGAAGAAGAATCAGCTGCCAGAGCATATGATTTAGCCGCACTTAAGTATTGGGGAACTTCAACCTTCACCAATTTTCCAATATCTGATTACGGGAAGGATATGGAAATAATGCAGACTATGACCAAAGAGGAGTATTTAGCAACTTTAAGGAGAAAGAGCAGTGGTTTTTCAAGAGGTGTGTCGAAGTATAGGGGTGTTGCAAGGCACCACCACAATGGTAGATGGGAAGCAAGAATAGGAAGGGTTTTTGGAAACAAATATCTCTATCTCGGCACGTATGGCACCCAAGAGGAAGCAGCACGAGCTTATGACTTAGCGGCCATTGAGTACAGAGGGATCAATGCTGTGACAAACTTTGATTTGAGCACTTACATAAAATGGTTAAAGCCAGGAGGAGTAAGCACCCCAGAAGCAAAACTTGAAACACAAGCAGTACTAGAGGGTCAAAAGGTGGCATCCCCATCTAATTATTCTCTAACAGAAGAGTCAAAATCTTCAGTCATTCACAACAGTTTTTTCAGCCTAGATTCTCTGAATTCCCCAGTAGGGCAAGAGAATTTTGGAAACAAACCCTACCCATTCTCAAGCAGTAAGTCATCTTCTCCCACTGCACTTGGCCTTCTTCTCCGCTCTTCGTTGTTTAGAGAATTGGTTGAGAAGAATTCAAATGTATCTGGAGATGAAGCTGATGATGGGGAAGTCACAAAAAGTGAACAGCCACAAATAGCTAGTGATGATGATCTGGGTGGAATCTTCTTTGATAGTATTGGTGATATCCCATTTGTTTGTGATCCCAATAGATACAACTTGGAATTGCAAGAAAGAGACCTGCACTCAATATTTTGA 1173 0.4237 MEMMKHNIIEVSLGKSQISMAEGDLQATRCVKRRRREVAAAVSSGDDSHQQQLPKQHGGENSTINTTKRSSKFRGVSRHRWTGRYEAHLWDKLSWNITQKKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPISDYGKDMEIMQTMTKEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYGTQEEAARAYDLAAIEYRGINAVTNFDLSTYIKWLKPGGVSTPEAKLETQAVLEGQKVASPSNYSLTEESKSSVIHNSFFSLDSLNSPVGQENFGNKPYPFSSSKSSSPTALGLLLRSSLFRELVEKNSNVSGDEADDGEVTKSEQPQIASDDDLGGIFFDSIGDIPFVCDPNRYNLELQERDLHSIF* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0991 390 SUPERFAMILY DNA-binding domain 170 231 IPR016177 GO:0003677
Vra4g0991 390 MobiDBLite consensus disorder prediction 38 75 - -
Vra4g0991 390 Gene3D AP2/ERF domain 170 231 IPR036955 GO:0003700|GO:0006355
Vra4g0991 390 Gene3D AP2/ERF domain 71 137 IPR036955 GO:0003700|GO:0006355
Vra4g0991 390 CDD AP2 71 137 IPR001471 GO:0003700|GO:0006355
Vra4g0991 390 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 374 - -
Vra4g0991 390 Pfam AP2 domain 71 127 IPR001471 GO:0003700|GO:0006355
Vra4g0991 390 Pfam AP2 domain 170 221 IPR001471 GO:0003700|GO:0006355
Vra4g0991 390 ProSiteProfiles AP2/ERF domain profile. 171 229 IPR001471 GO:0003700|GO:0006355
Vra4g0991 390 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 374 - -
Vra4g0991 390 CDD AP2 170 231 IPR001471 GO:0003700|GO:0006355
Vra4g0991 390 SUPERFAMILY DNA-binding domain 71 137 IPR016177 GO:0003677
Vra4g0991 390 MobiDBLite consensus disorder prediction 331 355 - -
Vra4g0991 390 SMART rav1_2 72 141 IPR001471 GO:0003700|GO:0006355
Vra4g0991 390 SMART rav1_2 171 235 IPR001471 GO:0003700|GO:0006355
Vra4g0991 390 ProSiteProfiles AP2/ERF domain profile. 72 135 IPR001471 GO:0003700|GO:0006355
Vra4g0991 390 MobiDBLite consensus disorder prediction 44 71 - -
Vra4g0991 390 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Vra4g0991 390 PRINTS Ethylene responsive element binding protein signature 211 231 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0991 Vra-Chr4 17048324 17050306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0991 68 233 AP2-EREBP Transcription Factor Family AT5G57390 67.456 1.25e-78 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vra4g0991 AP2 9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0991 - - gmx:100792612 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0991 4 17048324 17050306 Vra4g0991 4 17048324 17050306 ECH