Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0990 ATGGCAGGAAGTTCATGCAAGGTTGCCTTTATCTTGGTCGCTTTTGCCATTACTATTCCATGCCTTGAGGCTGGCATTGCCGCGTTCGACGAATTTCTCCAAGAAAAAGCTGTAGAGGCCCATGAAATCGCTATTAAATCCTACGTGCCTGACCCTACAAACGCTACTACCCACCAAGATATTCATGATGACGAGGATTTTAAGAAGATGTCAAAGAAGTCAAACAACACAAGGAGGGAGCTGAAGCAGAATGAGAAGAAGAAATACCATGGACCTTGCTTGGCCCTGAACCCAATCGATCGTTGTTGGAGGTGCAAGGAAAACTGGGCCAAAAACCGTTTTAAGTTAGCCAGTTGCGTGAAGGGTTTTGGAAGAAGGGCCATCGGAGGAGCCAACGGCAAAATCTACACTGTCACTGATCCCTCTGACGATGATCCCGTTAACCCAAAACCAGGAACCCTACGCTACGCGGTTCTACAAAAGGACCCACTGTGGATCATATTTTCACGAAGCATGGTCATCAAGTTGAATTACGAGTTGTTGATTTCTTCTGACAAAACCATCGACGGTCGCGGGTACAGCGTGGTGATCAAGGATGGCGCAGGCCTTACCATGCAGTTTGTGAACAACGTTATTATCCATGGGCTTAAAATACATCAGATCAAGTCCACGTCAGGTGGCATGATCAGGGACTCTTGGGACCATGTCGGAATAAGAACAAGGGCTGATGGGGATGCCATCTCCATTTTCGGCTCTTCAAACATTTGGATCGATCACATCTCACTCGCTGATTGCGAAGATGGTCTCGTCGACATTATCCAGGGATCCACTGCAATCACCATCTCAAATTGCCACATGACCAAACATAACGATGTGATGTTGTTCGGAGCGAGCGACACTTTCTCCGGAGACAAGATAATGCAGGTGACAGTGGCATTCAACCATTTCGGGCAGGGTCTGATTCAGAGAATGCCCAGATGCAGATGGGGTTTCTTCCATGTGTTGAACAACGACTACACTCACTGGCTGATGTATGCAATTGGTGGGAGCTCAGGGCCAACGATTCTGAGCCAAGGAAACCGGTTCATTGCACCAAACAACGACGCTGCGAAGATAGTGACGCACAGGGACTATGCACCCTCTTCTGAGTGGGAGAAATGGCAATGGAGATCAGAAAACGATGTCTTCATGAATGGGGCTAAGTTTATTCAGTCAGGGAAACCTCTTGGAAAGCTTCCATTTAACAAAGGGTTTCTCATGAAACCTAGACATGGGTCACAAGCCAACAGGCTCACACGCTTTGCTGGAGTCCTCAACTGCAAGGTGGGAAGCCCTTGCTAG 1341 0.4787 MAGSSCKVAFILVAFAITIPCLEAGIAAFDEFLQEKAVEAHEIAIKSYVPDPTNATTHQDIHDDEDFKKMSKKSNNTRRELKQNEKKKYHGPCLALNPIDRCWRCKENWAKNRFKLASCVKGFGRRAIGGANGKIYTVTDPSDDDPVNPKPGTLRYAVLQKDPLWIIFSRSMVIKLNYELLISSDKTIDGRGYSVVIKDGAGLTMQFVNNVIIHGLKIHQIKSTSGGMIRDSWDHVGIRTRADGDAISIFGSSNIWIDHISLADCEDGLVDIIQGSTAITISNCHMTKHNDVMLFGASDTFSGDKIMQVTVAFNHFGQGLIQRMPRCRWGFFHVLNNDYTHWLMYAIGGSSGPTILSQGNRFIAPNNDAAKIVTHRDYAPSSEWEKWQWRSENDVFMNGAKFIQSGKPLGKLPFNKGFLMKPRHGSQANRLTRFAGVLNCKVGSPC* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0990 446 Coils Coil 67 87 - -
Vra4g0990 446 PRINTS Pollen allergen Amb family signature 119 136 IPR018082 -
Vra4g0990 446 PRINTS Pollen allergen Amb family signature 143 168 IPR018082 -
Vra4g0990 446 PRINTS Pollen allergen Amb family signature 179 195 IPR018082 -
Vra4g0990 446 PRINTS Pollen allergen Amb family signature 243 264 IPR018082 -
Vra4g0990 446 PRINTS Pollen allergen Amb family signature 323 342 IPR018082 -
Vra4g0990 446 PRINTS Pollen allergen Amb family signature 345 364 IPR018082 -
Vra4g0990 446 PRINTS Pollen allergen Amb family signature 387 411 IPR018082 -
Vra4g0990 446 PRINTS Pollen allergen Amb family signature 417 440 IPR018082 -
Vra4g0990 446 PANTHER PECTATE LYASE 18-RELATED 6 446 IPR045032 GO:0030570
Vra4g0990 446 Pfam Pectate lyase 182 362 IPR002022 -
Vra4g0990 446 PANTHER PECTATE LYASE 6 446 - -
Vra4g0990 446 Pfam Pectate lyase, N terminus 26 81 IPR007524 GO:0030570
Vra4g0990 446 Gene3D - 96 439 IPR012334 -
Vra4g0990 446 SMART amb_all 171 368 IPR002022 -
Vra4g0990 446 SUPERFAMILY Pectin lyase-like 84 440 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0990 Vra-Chr4 17042835 17044768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0990 15 446 Polysaccharide Lyase AT5G15110 55.240 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0990 K01728 - gmx:100780236 723.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0990 4 17042835 17044768 Vra4g0990 4 17042835 17044768 ECH