Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0987 ATGCAGTTTCCCATTGCCTCTCTCCTCCACCACCTACACCCCTTCTGGACTGATTTTCAGAACTGTGATGTTCTTCTTTTAGTTCTGTTGATTGTGACTGTGATCACGGTCGTGATCATCATATGGGTTGCAGAGTCTTCAATTATTGGAAGGAGTTTGGATGTGGGGAAGTCAAAGGTAAAGATGCAAAAGGCTGGTGCAGAAAAGGAAATTGGGTGCTGTGTTAAATTCTGTTTCATTGGGAGCTGTATACCTTCAAGATCAAAGGTTGATACTTCCATCAGTGGCACTAGTGCTAACAGTGTGGAAAAAACACCTGCATATGAGAAAAACAAGAAGGAAACAAATGCTCTTCCAGGGTCCTCTACAACAACCAGTAATGCAGAAAGTATCCCTTCCACCCCAAAATTCAGTGAGGAGTTGAAGGTTTCTTCTCGTTTGAGAAAATTTACATTCAATGAGCTTAAGTTGGCCACTAGGAATTTCAGACCAGAGAGTCTTCTTGGTGAGGGAGGGTTTGGATGTGTTTTCAAGGGCTGGATTGAAGAAAATGGTACTGCACCCGTGAAACCTGGTACCGGGCTTACTGTAGCTGTGAAAACTCTCAACCATGATGGGCTTCAGGGTCACAAAGAGTGGCTTGCAGAGTTAGACATTCTTGGTGACCTCGTCCATCCAAATCTGGTCAAATTGGTTGGTTTCTGTATTGAAGATGACCAAAGATTGCTGGTTTATGAATGCATGCCCCGTGGAAGTTTGGAGAACCACCTCTTCAGAAAAGGGTCGTTGCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCCGCAAAAGGTCTTTCTTTTCTCCATGAAGAAGCTCAGCGACCAGTAATCTATCGTGATTTTAAGACATCTAATATTCTGTTGGATGCGGAATACAATGCAAAGCTCTCTGATTTTGGACTCGCCAAAGATGGTCCTGAAGGGGAAAAGACACATATATCAACAAGAGTCATGGGAACATATGGTTATGCAGCTCCTGAGTATGTGATGACTGGACACTTGACATCAAAAAGTGATGTCTATAGTTTTGGAGTAGTACTGTTAGAAATGCTGACCGGGCGGCGATCCATCGATAAGAACAGACCAAATGGGGAACACAATCTTGTGGAGTGGGCAAGGCCTGTGCTTGGCGACAGGAGGATGTTACTACGGATCATTGATCCTCGCCTTGAAGGTCACTTCTCTGTTAAAGGGGCACAGAAGGCTGCACAGCTGGCTGCTCAATGCCTCTGCCGTGATCCAAAATCCAGACCTATGATGAGTGATGTTGTTCATGCTCTGAAGCATTTGCAAAACCTCAAGGATATGGCCATCTCAACTTTTCATTTCCAGGTTGCACGAGTGGATCGAACCATGTCCATGCCAACTTCTAAAAATGGTATGCAAGCACAGTTAACAATATCAAGGAAGGGTCAACCTGCAAGGTCCTTGTCAAGTCCAAAAGGCCCTCATGGTTCTCCTTATCATCATTATATCAAGTCACCAAAACCAAATGGATGA 1548 0.4425 MQFPIASLLHHLHPFWTDFQNCDVLLLVLLIVTVITVVIIIWVAESSIIGRSLDVGKSKVKMQKAGAEKEIGCCVKFCFIGSCIPSRSKVDTSISGTSANSVEKTPAYEKNKKETNALPGSSTTTSNAESIPSTPKFSEELKVSSRLRKFTFNELKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAELDILGDLVHPNLVKLVGFCIEDDQRLLVYECMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLSFLHEEAQRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHISTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKNRPNGEHNLVEWARPVLGDRRMLLRIIDPRLEGHFSVKGAQKAAQLAAQCLCRDPKSRPMMSDVVHALKHLQNLKDMAISTFHFQVARVDRTMSMPTSKNGMQAQLTISRKGQPARSLSSPKGPHGSPYHHYIKSPKPNG* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0987 515 Pfam Protein kinase domain 165 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0987 515 MobiDBLite consensus disorder prediction 471 515 - -
Vra4g0987 515 MobiDBLite consensus disorder prediction 115 135 - -
Vra4g0987 515 ProSiteProfiles Protein kinase domain profile. 162 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0987 515 CDD STKc_IRAK 168 446 - -
Vra4g0987 515 MobiDBLite consensus disorder prediction 89 135 - -
Vra4g0987 515 MobiDBLite consensus disorder prediction 471 491 - -
Vra4g0987 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 292 304 IPR008271 GO:0004672|GO:0006468
Vra4g0987 515 MobiDBLite consensus disorder prediction 89 105 - -
Vra4g0987 515 Gene3D Transferase(Phosphotransferase) domain 1 248 465 - -
Vra4g0987 515 ProSitePatterns Protein kinases ATP-binding region signature. 168 200 IPR017441 GO:0005524
Vra4g0987 515 PANTHER OS01G0588500 PROTEIN-RELATED 96 507 - -
Vra4g0987 515 SUPERFAMILY Protein kinase-like (PK-like) 136 443 IPR011009 -
Vra4g0987 515 Gene3D Phosphorylase Kinase; domain 1 142 247 - -
Vra4g0987 515 PANTHER RECEPTOR-LIKE KINASE PLANT 96 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0987 Vra-Chr4 17010259 17014622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0987 103 459 Glycoside Hydrolase AT3G07070 50.678 9.24e-117 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra4g0987 Pkinase 4.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0987 - - aprc:113861691 875.93