Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0979 ATGGTGGTGAATGAAAAGTGTGATGTGTATAGCTTCGGAGTGGTGGCACTGGAAACTTTGATGGGAAAACATCCTAAAGAAATACTCTCATCACTTCAATCAACTTGTACTGATGATGACATCAAATTATGTGATATATTGGATCAACGCCTCTCGCACCCAACATTCTCAGTTTTACAAGACATAGTTGTTGTTGCCATTGTGACTTTTGCATGCTTAAATCCCAATCCTTGTTCTCGTCCAACAATGAAACGCATCTCTCAATGTTTCCTTAGTCAACTCATACCATTAAACATTCCTTTACATCATATTTCGTTGCAACAACTCATGAGTCAAGAACTTAGATCCTCTTTGAAATTGTAA 363 0.3747 MVVNEKCDVYSFGVVALETLMGKHPKEILSSLQSTCTDDDIKLCDILDQRLSHPTFSVLQDIVVVAIVTFACLNPNPCSRPTMKRISQCFLSQLIPLNIPLHHISLQQLMSQELRSSLKL* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0979 120 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 116 - -
Vra4g0979 120 Gene3D Transferase(Phosphotransferase) domain 1 2 92 - -
Vra4g0979 120 SUPERFAMILY Protein kinase-like (PK-like) 3 105 IPR011009 -
Vra4g0979 120 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0979 Vra-Chr4 16891954 16893058 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0979 4 87 Receptor kinase-like Gene Family AT2G01210 34.066 1.39e-10 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra4g0979 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0979 - - var:108327179 217.624