Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0977 ATGGTATTGAGTGAACATAATTTGGTGAAACTTGAGTTTCTCATAAATATACCTTCTATTTATTACCTCTATTCGAAGAGGATGCAGTTTTTGGTTTACAATTTCCATCTTTTTATTTATGCTTTGCTTTTAATGGGCTCTGTTTTAGAGTTTGGATGCGTGTCTACACCATCACAGCTTCAGTTGGAAGCAAACGCTATAATCAGTAGTAGATGGTGGTCTCTGTCAGATTCAGATGATATCTGTTCATCGACTGAAGGTATAAGTTGCAATGATGTTGGAAGTGTAACTCGTATAGCATATGAATATCCCGAACAACCGATTGAATTAGCAACACTAAACCTCTCTGCTTTCAAGAATTTGGAACATCTTGAGGTCTCCTATAGTCTAAAAGGTACTATTCCATCTCAAATTGGAAATCTTTCAAAACTCACTTATCTTGATTTATCTCACAATTCTCTTCAAGGTNAAATACCTGCATTACTAGGANATCTTTCAAAACTCACTTATCTTGATTTATCTCACAATTCTCTTCAAGGTGAAATACCTGCATCACTAGGATATCTAACCAATCTATTGACCCTGATAATCTCTAACAACAAAATCAATGGAACCTTGCCCATTTCACTTTCAAACCTCATGAACCTTCAAAATATTGACATTTCACACAATCTACTCACCGGTTCCCTTGAACCTTTCTCAGTCGGATATTTTCCACTTTTGAAAAGTCTGGATCTAAGTTACAATAGTCTTATCGGAGGAATTCCTGTGTCCCTACATAATGTCCACTATGTGGACCTTTGCTTCAATAATATGAATGGTCCCATTCCAAATGGTGTGAGTCCATATGCACTAATGGGAAACAAGGGTGTATGCAGCAACGTTTCACATATACAAATCAATTTCCAATTTCAGCCTTGTCCAGTCAACCAGAAGAAACAAAAACGAAGGCAGTTGGTCATAATTCTTTTCATCACCATATTTCTAATCATGGCCTTCTTACTACTTTTATATATGAGGCACAACTGCATTGTAGCCAAGAAAAAACATGAAATGATAACTGAAAAATCTAAGAATGGGGACTTGTTTTGCATATGGAACTATGACGGAAGCATAGCCTATGAAGACATCATTACAGTAACCGAAGACTTTGATCTCAAATATTGTATAGGAACAGGTGCGTACGGAAGCGTCTATAGGGCTCAATTACCTAGTGGAAAGATTGTTGCGGTGAAGAAACTCCATGGTTTTGAAGCAGAGGTCCCCACTTTTGATGAGAGTTTCAGAAACGAAGCCAAAGTACTATCGGAAATAAAGCACCGACATATAGTAAAGCTCCATGGATTCTGCTTACACAAAAGAATAATGTTTTTGATCTATGAGTACATGGAGAAAGGAAGCTTGCTTTCTGTGTTGTTCGATGACAGGGAAGCAATAGAATTTGATTGGAAAAAGAGGGTTAACACAGTGAAAGGAACTGCACATGCTCTCTCATATCTCCATCATGATTGTGTCCCTCCAATAGTGCATAGAGACATATCAGCAAGCAACGTCTTGCTTAACTCCAAGTGGGAGCCCACTGTTTCCGACTTTGGCACTGCCCGATTTCTCAACCTTGATTCATCCAATCNAACTATAGTTGNTGGAACCATTGGATACATAGCACCTGAGCTTGCATATACAATGGTTGTGAATGAAAAGTGTGATGTGTATAGCTTCGGAGTGGTGGCATTGGAAACTTTGATGGGAAAACATCCTAAAGAAATACTCTCATCACTTGATTCAACTTGTACAGATGGTGGCATTAAATTATGTGAAATATTAGACCAACGCCTCTCACACCCAACATTCACAGTTTTGCAAGACATAGTTGTTGTTGCTATTGTGGCTTTTGCATGCTTAAATCCCAATCCTTGCTCTCGCCCAACAATGAAACAAATCTCTCAATGTTTCGTGAGTCAGCTCACACCATTCAAAATTCCTTTACGTGATATTTCGCTGCAACAACTCATGAGTCAAGTACTCAGACACAACTTAAATTTATCAACTTTTTGA 2055 0.38 MVLSEHNLVKLEFLINIPSIYYLYSKRMQFLVYNFHLFIYALLLMGSVLEFGCVSTPSQLQLEANAIISSRWWSLSDSDDICSSTEGISCNDVGSVTRIAYEYPEQPIELATLNLSAFKNLEHLEVSYSLKGTIPSQIGNLSKLTYLDLSHNSLQGXIPALLGXLSKLTYLDLSHNSLQGEIPASLGYLTNLLTLIISNNKINGTLPISLSNLMNLQNIDISHNLLTGSLEPFSVGYFPLLKSLDLSYNSLIGGIPVSLHNVHYVDLCFNNMNGPIPNGVSPYALMGNKGVCSNVSHIQINFQFQPCPVNQKKQKRRQLVIILFITIFLIMAFLLLLYMRHNCIVAKKKHEMITEKSKNGDLFCIWNYDGSIAYEDIITVTEDFDLKYCIGTGAYGSVYRAQLPSGKIVAVKKLHGFEAEVPTFDESFRNEAKVLSEIKHRHIVKLHGFCLHKRIMFLIYEYMEKGSLLSVLFDDREAIEFDWKKRVNTVKGTAHALSYLHHDCVPPIVHRDISASNVLLNSKWEPTVSDFGTARFLNLDSSNXTIVXGTIGYIAPELAYTMVVNEKCDVYSFGVVALETLMGKHPKEILSSLDSTCTDGGIKLCEILDQRLSHPTFTVLQDIVVVAIVAFACLNPNPCSRPTMKQISQCFVSQLTPFKIPLRDISLQQLMSQVLRHNLNLSTF* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0977 684 ProSiteProfiles Protein kinase domain profile. 384 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0977 684 ProSitePatterns Tyrosine protein kinases specific active-site signature. 508 520 IPR008266 GO:0004672|GO:0006468
Vra4g0977 684 ProSiteProfiles Leucine-rich repeat profile. 143 165 IPR001611 GO:0005515
Vra4g0977 684 Gene3D Phosphorylase Kinase; domain 1 344 462 - -
Vra4g0977 684 Pfam Leucine rich repeat 120 178 IPR001611 GO:0005515
Vra4g0977 684 Gene3D Ribonuclease Inhibitor 58 186 IPR032675 -
Vra4g0977 684 SUPERFAMILY Protein kinase-like (PK-like) 365 650 IPR011009 -
Vra4g0977 684 Gene3D Transferase(Phosphotransferase) domain 1 463 657 - -
Vra4g0977 684 PRINTS Leucine-rich repeat signature 144 157 - -
Vra4g0977 684 PRINTS Leucine-rich repeat signature 165 178 - -
Vra4g0977 684 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 56 176 - -
Vra4g0977 684 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 167 677 - -
Vra4g0977 684 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 167 677 - -
Vra4g0977 684 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 56 176 - -
Vra4g0977 684 Gene3D Ribonuclease Inhibitor 187 300 IPR032675 -
Vra4g0977 684 Pfam Leucine Rich Repeat 241 261 IPR001611 GO:0005515
Vra4g0977 684 SUPERFAMILY L domain-like 69 283 - -
Vra4g0977 684 ProSitePatterns Protein kinases ATP-binding region signature. 390 413 IPR017441 GO:0005524
Vra4g0977 684 Pfam Protein kinase domain 389 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0977 Vra-Chr4 16869241 16871732 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0977 121 556 Receptor kinase-like Gene Family AT4G08850 41.722 5.09e-105 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra4g0977 Pkinase 2.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0977 - - var:108327179 889.026