Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0976 ATGGCCGAACTATGGACACAAATGGGCTCTTTGATGGCCACAATCATGTTTCTGTATGCCATGCTAGAGCGTTTTTTCCCCGCTGCACTTCGTGACACTCTACAAATCCACACTCAGAAACTTGTTAATTTGTTGTACCCATATGTGCAAATCACCTTCCCTGAGTTCTCTGGTGAGAGGCTCAAACGCAGTGAGGCTTACACTGCCATCCAAACTTACCTCAGTGAGAACTCTTCCCAACTGGCCAAAAGGCTGAAAGCTGAAGTTGTGAAAGATAGCCAGAACCCTTTGGTGCTTAGCATGGACGATGATGAAGAAGTTACTGACGAGTTCCAAGGAGTGAAGCTTTGGTGGGCTGCTAGCAAGACTGCTTCTAACCCTCATGCGTATTCTTTCTCTTATTACTCTCCCCTGGATGGTAAGAGGTATTTCAAGCTAACTTTCCATAAAAAGCATAGGGATCTCATCACCGTGGCTTACATCAAACACGTGTTGGAAGAGGGGAAGGAAATTGCCTTGAGAAACAGGCAACGGAAGTTGTACACCAACAATCCTAGCAGTGGTTGGTATGGTTACAAACAGTCAAAGTGGAGCCACATAGTGTTCGAGCATCCTGCAACGTTCGAGACTCTTGCAATGGAGCGTACGAAGAAGGAAGAAATCATCAACGACCTTGTTAAGTTCAGGAATGGGAAGGATTACTATGCGAAGATTGGGAAGGCTTGGAAGCGGGGCTATTTGCTGTATGGTCCTCCTGGGACTGGTAAGTCTACCATGATAGCTGCAATGGCTAATTTCATGAACTATGATGTGTACGATCTTGAGCTGACAGCAGTGAAGGACAACACTGAGTTGAGGAAGTTGTTGATTGAAACTTCTAGTAAGGCTATTATAGTTGTGGAAGACATTGATTGCTCGCTTGATTTGACTGGGCAGAGGAACATGAGGAAGGAAAGGAGTGAGGAAGAGGAAGCAAAAGATCCTAATAAAAAGGAAGAAGAGGAGAGTAACAGGAGTAGTAAGGTCACTCTTTCTGGGTTGTTGAATTTTATTGATGGTATTTGGTCAGCATGTGGGGGAGAAAGGATCATCATTTTCACAACCAACTTTGTGGACAAGCTTGATCCTGCTCTTATTAGGACAGGTAGGATGGACAAGCACATTGAATTGTCCTATTGCAGCTTTGAAGCATTCAAGGTGCTTGCCAAGAACTACTTGGATGTTGACTCACACCATTTGTTTTCAAGGATTGGCAATTTGTTGGAAGTAACCACTGTGACTCCTGCTGATGTTGCTGAAAATCTCATGCCCAAATGTGTCAATGAAGATGTAGAGACTTGCTTGCTGAGTTTGATTCAAGCTCTTGAGAAAAAGTTGGCGGAAGAAGAAGAAGAAGAAGAATCAGATGATGGAGGGTTGAATGAAGAAAAGGACAAGGAGGAAGCTACTGAGCAGGAGATTAAAAATAATGGGCACTGTGTGGAAGATGTGAAGGGAAATGGATTCATCCTTTGA 1515 0.4389 MAELWTQMGSLMATIMFLYAMLERFFPAALRDTLQIHTQKLVNLLYPYVQITFPEFSGERLKRSEAYTAIQTYLSENSSQLAKRLKAEVVKDSQNPLVLSMDDDEEVTDEFQGVKLWWAASKTASNPHAYSFSYYSPLDGKRYFKLTFHKKHRDLITVAYIKHVLEEGKEIALRNRQRKLYTNNPSSGWYGYKQSKWSHIVFEHPATFETLAMERTKKEEIINDLVKFRNGKDYYAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFMNYDVYDLELTAVKDNTELRKLLIETSSKAIIVVEDIDCSLDLTGQRNMRKERSEEEEAKDPNKKEEEESNRSSKVTLSGLLNFIDGIWSACGGERIIIFTTNFVDKLDPALIRTGRMDKHIELSYCSFEAFKVLAKNYLDVDSHHLFSRIGNLLEVTTVTPADVAENLMPKCVNEDVETCLLSLIQALEKKLAEEEEEEESDDGGLNEEKDKEEATEQEIKNNGHCVEDVKGNGFIL* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0976 504 Pfam Domain associated at C-terminal with AAA 26 120 IPR025753 -
Vra4g0976 504 Gene3D - 389 462 - -
Vra4g0976 504 Pfam ATPase family associated with various cellular activities (AAA) 247 391 IPR003959 GO:0005524|GO:0016887
Vra4g0976 504 MobiDBLite consensus disorder prediction 460 504 - -
Vra4g0976 504 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 3 488 - -
Vra4g0976 504 MobiDBLite consensus disorder prediction 313 338 - -
Vra4g0976 504 ProSitePatterns AAA-protein family signature. 362 380 IPR003960 GO:0005524|GO:0016887
Vra4g0976 504 Coils Coil 445 465 - -
Vra4g0976 504 SMART AAA_5 242 394 IPR003593 -
Vra4g0976 504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 440 IPR027417 -
Vra4g0976 504 Gene3D - 196 388 IPR027417 -
Vra4g0976 504 MobiDBLite consensus disorder prediction 475 493 - -
Vra4g0976 504 PANTHER BCS1 AAA-TYPE ATPASE 3 488 - -
Vra4g0976 504 MobiDBLite consensus disorder prediction 460 474 - -
Vra4g0976 504 CDD AAA 243 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0976 Vra-Chr4 16865268 16867510 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0976 207 390 Miscellaneous Gene Families AT5G58870 30.208 3.44e-11 63.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0976 4 16865268 16867510 Vra4g0976 4 16865268 16867510 ECH
Vra1g0228 1 2846065 2847908 Vra4g0976 4 16865268 16867510 PCT
Vra4g0976 4 16865268 16867510 Vra1g0229 1 2854177 2855912 PCT