Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0975 ATGGGTTCAGAGTGGTCTCTGTTAGGGTCATTCACTGCAACAATTATGATAGCATACACTGTGTTTGACAAGTTCATCCCAAACCATATCCGTTCTTATGTACAAATATACGCTCACAAACTAATAGGTTTTCTTTCTCCTTACATCCAAATCACCTTCCCTGAATTCTCAGGTGAACGTCTCACACACAGTGAGCTTTTCACTGCCATCCAAACTTACCTCGTTCAAAACTCTTCTCAACGTGCCAGAAAACTCAAAGCTGAGCCTGCCGCCGACAGCAACAGCCCCTTTCTTCTTTCCATGGACGACAACGAAGAAATCACAGAGATTTTCCAAGGGGTGAAGCTCTGGTGGGGTTCTCACAAAAGCATGATCAAAACACAGTCCTTTTCGTTTTACCCTAGTTCTGATGAGAAGAGGTTCTACACCCTCACCTTTCACAAGCGCCACAGAGACCTCGTTTCAACCACTTACATCCCCCACGTGTTGGAACAAGGTAAATCGCTCAAACTGAAGAATCGGCAACTCAAGCTGTTCACCAACAATTCTTACACCGGTTGGGGAGGGTATAGAAAATCGAAGTGGAGCCACGTTGTGTTTGAGCACCCTGCGAGGTTTGAAACCCTTGCTATGGAGAAAGCGGCGAAGGAAGAGATCATAGATGATCTTCTGACCTTCAAGAATGGAAAGGAGTATTATGACAAGATAGGGAAGGCTTGGAAGCGTGGTTATTTGCTGTATGGCCCTCCGGGGACCGGAAAATCTACCATGATTGCTGCTATGGCTAATTTTTTATACTATGATGTTTATGATCTTGAGTTGACAGCAGTGAAGGATAACACACAGTTAAGGTCACTGCTGATTGAGACAACGAGTAAGTCTATTATTGTGATTGAAGACATCGATTGCTCTATTGATCTTACTGGGAAGAGGGTGGTGAAAAAGGAGAAGGAAAAAAGTGAGGATGCGAAGGATCCTGTTAAGAAGGCCGAGGAAGAAGATAACAAAGAGAGTAAGGTGACTTTGTCGGGTTTGTTGAATTGCATTGATGGGATTTGGTCAGGTTGTGCAGGAGAGAGGATCATTATTTTTACTACAAACCATGTGGACAAGCTTGATCCTGCTCTGATTAGAAGTGGAAGAATGGACAAGAAAATAGAGCTGTCTTATTGTTGTTATGAGGCTTTTAAGGTTCTTGCCAAGAATTATTTGGATGTTGATTATCATGGTTTGTTTTGTGTTGTTGAGGGGTTGCTGAAAGAGACCAAGATGACACCTGCTGATGTTGCTGAGAACATGATGCCTAAGTCCAAGAGGGATGATGTGGAGACATGTTTGAAGAAGTTGATTGAATCTCTTAAGAAGGCAAAGAAGAAGGCTGAGGAAGAAGCACAAAAGAAGGCTGAGGAAGAAGAAGCTAGGTTGAAGAAGGAGGAGAAGGAAAAGGAGCAGGAGAAGCTAGCAGAAGTAAAGAGTGACGAGAAAGCTGGGAAAGAGGTGAAGGAGAATGGATCTGTCCATTGA 1524 0.4344 MGSEWSLLGSFTATIMIAYTVFDKFIPNHIRSYVQIYAHKLIGFLSPYIQITFPEFSGERLTHSELFTAIQTYLVQNSSQRARKLKAEPAADSNSPFLLSMDDNEEITEIFQGVKLWWGSHKSMIKTQSFSFYPSSDEKRFYTLTFHKRHRDLVSTTYIPHVLEQGKSLKLKNRQLKLFTNNSYTGWGGYRKSKWSHVVFEHPARFETLAMEKAAKEEIIDDLLTFKNGKEYYDKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLYYDVYDLELTAVKDNTQLRSLLIETTSKSIIVIEDIDCSIDLTGKRVVKKEKEKSEDAKDPVKKAEEEDNKESKVTLSGLLNCIDGIWSGCAGERIIIFTTNHVDKLDPALIRSGRMDKKIELSYCCYEAFKVLAKNYLDVDYHGLFCVVEGLLKETKMTPADVAENMMPKSKRDDVETCLKKLIESLKKAKKKAEEEAQKKAEEEEARLKKEEKEKEQEKLAEVKSDEKAGKEVKENGSVH* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0975 507 MobiDBLite consensus disorder prediction 460 507 - -
Vra4g0975 507 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 4 486 - -
Vra4g0975 507 ProSitePatterns AAA-protein family signature. 360 378 IPR003960 GO:0005524|GO:0016887
Vra4g0975 507 PANTHER BCS1 AAA-TYPE ATPASE 4 486 - -
Vra4g0975 507 CDD AAA 241 390 - -
Vra4g0975 507 Pfam ATPase family associated with various cellular activities (AAA) 245 389 IPR003959 GO:0005524|GO:0016887
Vra4g0975 507 SMART AAA_5 240 392 IPR003593 -
Vra4g0975 507 Gene3D - 194 386 IPR027417 -
Vra4g0975 507 Coils Coil 313 333 - -
Vra4g0975 507 Gene3D - 387 472 - -
Vra4g0975 507 Pfam Domain associated at C-terminal with AAA 26 121 IPR025753 -
Vra4g0975 507 Coils Coil 439 493 - -
Vra4g0975 507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 457 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0975 Vra-Chr4 16855275 16857001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0975 206 488 Miscellaneous Gene Families AT3G02450 26.190 5.18e-12 66.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0975 4 16855275 16857001 Vra4g0975 4 16855275 16857001 ECH
Vra4g0975 4 16855275 16857001 Vra1g0228 1 2846065 2847908 ECH
Vra4g0975 4 16855275 16857001 Vra1g0228 1 2846065 2847908 PCT