Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0973 ATGGCTGAAAAAGATGATGTTGGGTTGAGTTTGAGTTTGAGTTTGGGAGTGAATCAACACTCTTTCAAGGTGAATAACATGCACCACCCTCAACAACAACAACAACTGCAGCATCAACCCCAACCTGTTCCCATAAATCACAACAAAACTCTCTTTGCTGATTTGTTTCAGTTACCAGATCGGAGCTCCGATGTGATACGAGTAATCGACGTGAAATCGACGGTGGAATGTGAGGAAGACAACGGCATTTCGTCGCCGAACAGCGCCGTGTCAAGCGTCAGCGGCAGCAAGCGGAGCGAGAGGGACGACGATAATGCTGCTTTGGTGGCCTCTGGAGAGAGGACGTCGTGCTCGCGGGGGAGCGATGACGATGATGGTGGCGGCGGAGACTGCGAAGGCGGGAGGAAGAAACTGAGGCTCACGAAAGAACAGTCCATGGTGTTGGAAGAAACCTTCAAGGAGCATAACACACTGAATCCGAAACGAAAACAAGCTTTGGCAGAGGAGTTGAATCTGAAGCCAAGACAAGTAGAAGTGTGGTTTCAGAACAGAAGGGCAAGGTTGCCAATGGAAAACTACAAGACATGA 588 0.4949 MAEKDDVGLSLSLSLGVNQHSFKVNNMHHPQQQQQLQHQPQPVPINHNKTLFADLFQLPDRSSDVIRVIDVKSTVECEEDNGISSPNSAVSSVSGSKRSERDDDNAALVASGERTSCSRGSDDDDGGGGDCEGGRKKLRLTKEQSMVLEETFKEHNTLNPKRKQALAEELNLKPRQVEVWFQNRRARLPMENYKT* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0973 195 SUPERFAMILY Homeodomain-like 117 188 IPR009057 -
Vra4g0973 195 CDD homeodomain 135 188 IPR001356 GO:0003677
Vra4g0973 195 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 5 187 - -
Vra4g0973 195 MobiDBLite consensus disorder prediction 78 95 - -
Vra4g0973 195 ProSiteProfiles 'Homeobox' domain profile. 131 191 IPR001356 GO:0003677
Vra4g0973 195 SMART HOX_1 133 195 IPR001356 GO:0003677
Vra4g0973 195 Gene3D - 141 188 - -
Vra4g0973 195 Pfam HD-ZIP protein N terminus 1 102 IPR006712 GO:0005634
Vra4g0973 195 MobiDBLite consensus disorder prediction 24 43 - -
Vra4g0973 195 Pfam Homeodomain 135 187 IPR001356 GO:0003677
Vra4g0973 195 PANTHER - 5 187 - -
Vra4g0973 195 MobiDBLite consensus disorder prediction 76 138 - -
Vra4g0973 195 MobiDBLite consensus disorder prediction 117 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0973 Vra-Chr4 16827373 16830839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0973 1 187 Homeobox Transcription Factor Family AT5G47370 48.515 2.83e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vra4g0973 HD-ZIP_N 2.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0973 K09338 - gmx:100819624 201.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0973 4 16827373 16830839 Vra4g0973 4 16827373 16830839 ECH
Vra9g0700 9 7946127 7949261 Vra4g0973 4 16827373 16830839 PCT