Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0971 ATGAGAATTGCTACTCCTTCTTCTTCCTTGTCTTCCTCGGGTTGTTCGCATTTCTGGTCGTCGGCGCGCCGATCCAAGCGCCTCGCGACGCCGGAGGAGAAGGCCTACCGCGACAGCACCGACCTCGGCCTCTCCCGCCGCCTCGGCGTCATCGACCTTGTACTCCTTGGGATTGGCGCATCCATCGGCGCCGGCATCTTCGTCGTCACCGGCACCGTGGCCCGCGACGCCGGACCCGGAGTGACGATAAGTTTTATACTTGCGGGAGCATCGTGTGTTATAAATGCACTCTGTTATGCTGAACTAGCTTCTCGTTTTCCCGCTGTTGTCGGAGGAGCTTATCTATATACATACACAGCTTTTAATGAACTTACGGCTTTTCTTGTTTTTGCACAATTAATGCTTGACTATCACATTGGAGCAGCGAGTATTGCCAGAAGCCTAGCAAGTTATCTGATAAATATTCTAGAACTCTTTCCTGTTTTCAAAGATAACATTCCAAATTGGATTGGGCATGGTGAAAGCATTGGAGATGTGTTATCCATCAATATCTTGGCTCCTATTCTGCTAATACTTCTCACTTTAGTTCTATGTCTAGGTGTTCATGAATCGTCAATTGCGAATTGTATTATGACAGTGACCAAGGTAATCATTGTTATCATTGTCATTTTTGCTGGAGCATTTGAGGTTGATGTTTCCAACTGGTCTCCCTTTGCTCCAAATGGTTTAAAATCTATATTTACAGGAGCTACAGTAGTCTTCTTTGCATATGTTGGTTTTGATGCAGTTGCCAATTCTGCCGAAGAATCTAAGAGGCCTCAGCGGGATTTGCCAATTGGCATAATAGGAAGCCTCTTAGTATGTATTGCATTGTACATTGGAGTATGCTTGGTTATTACTGGAATGGTTCCATACAATCTTCTAGGAGAAGATGCTCCTCTGGCTGAAGCTTTTACATCCAAGGGATTAAAATTTGTTTCTGTTCTGATTAGCATTGGTGCTGTTGCCGGACTTACAACAACACTCCTTGTTGGTCTCTATGTTCAGTCTCGGTTATATCTCGGGATTGCCAGGGATGGCTTACTACCCTCAATATTTGCAAGAGTTCACTCCATACGCCACACCCCTATTCATTCTCAGATCTGGGTTGGCTTGGTTGCCAGTATTTTGGGTGGGCTGTTGGATGTGCGTGTGCTCTCTCACATTCTTTCCGTTGGTACACTGACTGGATATTCAGTTGTCTCAGCATGTGTTGTTGTACTTCGCTGGAAGGATAAGAAAGGTAGTCAAGTGTCGTCTTCTGCTGAGCGGGAAGGTGTAATTTGCCTCATTGTCGTTGCTCTTTGTGGATTTGCTACTGGGCTCTTGTACCGTTATGATGCTTCATTTATTTTTCTGATTCTCACCATAGTTATCGCAGCCGGTGCTTCTGCTGCTCTTGTTTTCCGTCAGAACACATTGATGGTTGTATGTGTCAAATACACCAAACGGAAAGGCAATCTGAAGGTTTACGCAAATGCACCAGGGTTTTCCTGCCCAGGGGTTCCCATTCTGCCAAATATCTGCATATTTTTCAACATGTTCTTATTTGGCCAGTTGCATGAAGAGGCATGGGTCAGATTTGTGGTTCTTTGTATTGTCATGATTGGTGTTTATGCAATATATGGCCAGTATCATGCGAACCCCAGTGCAGAAGATAATATCTATATTGAGGCACCTGTGGAAGAAGATCCATGA 1737 0.4496 MRIATPSSSLSSSGCSHFWSSARRSKRLATPEEKAYRDSTDLGLSRRLGVIDLVLLGIGASIGAGIFVVTGTVARDAGPGVTISFILAGASCVINALCYAELASRFPAVVGGAYLYTYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYLINILELFPVFKDNIPNWIGHGESIGDVLSINILAPILLILLTLVLCLGVHESSIANCIMTVTKVIIVIIVIFAGAFEVDVSNWSPFAPNGLKSIFTGATVVFFAYVGFDAVANSAEESKRPQRDLPIGIIGSLLVCIALYIGVCLVITGMVPYNLLGEDAPLAEAFTSKGLKFVSVLISIGAVAGLTTTLLVGLYVQSRLYLGIARDGLLPSIFARVHSIRHTPIHSQIWVGLVASILGGLLDVRVLSHILSVGTLTGYSVVSACVVVLRWKDKKGSQVSSSAEREGVICLIVVALCGFATGLLYRYDASFIFLILTIVIAAGASAALVFRQNTLMVVCVKYTKRKGNLKVYANAPGFSCPGVPILPNICIFFNMFLFGQLHEEAWVRFVVLCIVMIGVYAIYGQYHANPSAEDNIYIEAPVEEDP* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0971 578 Pfam Amino acid permease 48 453 IPR002293 GO:0016020|GO:0022857|GO:0055085
Vra4g0971 578 Gene3D Amino acid/polyamine transporter I 44 489 - -
Vra4g0971 578 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Vra4g0971 578 PANTHER CATIONIC AMINO ACID TRANSPORTER 9, CHLOROPLASTIC 8 572 - -
Vra4g0971 578 Pfam C-terminus of AA_permease 510 559 IPR029485 -
Vra4g0971 578 PANTHER INNER MEMBRANE TRANSPORTER YGJI-RELATED 8 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0971 Vra-Chr4 16804162 16809569 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0971 11 484 Organic Solute Cotransporters AT1G05940 71.190 0.0 646
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0971 4 16804162 16809569 Vra4g0971 4 16804162 16809569 ECH
Vra1g0164 1 1907635 1909908 Vra4g0971 4 16804162 16809569 PCT