Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0969 ATGAATCGTAGAGTGAGGAGGAAAGTGGCAAGGAAAAGTAAAGGGAATGTGGTGCAATCTAGTTCCCCTGAAGTTCAGGAGGAGGTTTTGCATTTGGAACCCCAAGGAGTTGTTGATTGGAACTGCTTGCCTGATGACACAGTAATTCAGCTGTTGTCATGTCTGAGTTACCGAGATCGAGCTAGCTTGTCGTCAACTTGTAAAACATGGAGGTCTCTTGGTAGCTCCCCGTGTCTGTGGACTTCTCTGGATCTTCGTTCGCACAGGTTTGATGCTGACATGGCTTCATCACTTGCTCCCAGGTGTGTGCACCTACAGAAGCTCAGGTTTCGGGGGGAGGAATCTGCTAATGCAATAATTCATCTTCGAGCTAAGAACTTGCGTGAATTGAGCGGTGACTATTGCAGGAAGATTAGTGATGCAACTCTTTCAGTGATTGTAGCTCGGCACGAGTCACTTGAGAGCCTTCAGCTTGGACCAGATTTTTGTGAGAGAATAAGTAGTGATGCTATTAAAGCAATAGCTCATTGCTGTCCTAACTTGAGTAAGCTCAGACTCTCGGGTATCAGGGATGTAAATGGTGATGCTATTAATGTTTTGGCTAAGCATTGTCCAAAGTTGACTGATATTGGTTTCATTGACTGTCTGAATGTTGACGAGGTTGCACTGGGAAATGTGTTATCAGTTCGTTTCCTTTCTGTGGCGGGGACTTCAAGTATGAAGTGGGGTGTGGTTTCCCATCTTTGGCATAAACTTCCTAACCTGATTGGATTAGATGTTTCAAGAACTGATATTGGACCATCCGCTGTTTTCAGACTGTTATCCTTAACACAGAATTTGAGGGTTTTGATTGCCCTGAATTGTCCTATCCTCGAAGAAGACACTAGCTTTTCTGCTAGTAAATATAAAAACAAGTTATTAGTTTCCCTTCGTACTGATATTTTTAAAGGACTGGCTTCTTTATTTTTTGATAATACAAAGAGAGGAAAAAATGTGTTTTTGGACTGGAGGACCTCAAAGAATAATGATAAGGATCTTAATGAAATTATACCCTGGCTTGAGTGGATGCTGTCTCACACACTTTTGCGTTCTGCTGAGAGTCCTCAGCAGGGTCTTGATAATTTCTGGGTTGAACAAGGTGGAGCACTTTTGCTTAGTCTAATGCAGAGTTCTCAGGAGGATGTTCAAGAGAGGGCAGCCACAGGACTTGCAACTTTTGTTGTAATTGATGACGAAAATGCTAGCATAGATTGTGGAAGGGCTGAAGCAGTTATGCGAGATGGAGGCATACGCCTCCTACTTGGCCTGGCGAAGTCTTGGAGGGAAGGGCTTCAATCTGAGGCGGCCAAGGCCATTGCAAATTTGTCTGTCAATGCCAATGTGGCCAAAGCTGTTGCAGAAGAAGGTGGGATTGAGATTCTTGCTGGTTTGGCTAGGTCTATGAACAAGCTGGTGGCTGAAGAGGCTGCCGGAGGATTATGGAATCTCTCTGTTGGAGAAGAGCACAAGGGTGCTATTGCTGAAGCCGGTGGAATACAAGCTTTAGTGGATCTTATCTTCAAGTGGTCCTCTAGTGGAGATGGAGTTTTAGAACGGGCGGCTGGTGCATTGGCTAATTTGGCAGCTGATGACAAGTGTAGTACAGAGGTTGCACTGGCAGGAGGTGTGCATGCTCTGGTGATGCTTGCACGTAAGTGCAAATTTGAGGGAGTGCAAGAGCAGGCTGCTCGTGCATTGGCTAACTTAGCTGCTCATGGAGATAGTAACAGTAACAATGCTGCCGTTGGACAAGAAGCAGGTGCTCTTGAGGCTCTTGTTCAACTTACTCGTTCTCCCCACGAGGGCGTTAGGCAAGAGGCTGCTGGTGCACTTTGGAATTTGTCATTTGACGATAGAAATCGAGAAGCCATTGCCGCATCTGGCGGAGTTCAGGCCTTGGTTGCTCTTGCCCAAGCTTGTGCTAATGCCTCCCCTGGACTTCAAGAGAGGGCTGCTGGAGCTCTGTGGGGATTATCAGTCTCGGAAACTAATAGTGTTGCCATTGGAAGAGAAGGAGGTGTTGCACCTCTGATTGCACTTGCACGGTCTGAAGCAGAGGATGTTCATGAAACTGCTGCAGGGGCACTATGGAATCTTGCTTTCAATGCTAGTAATGCTCTACGAATAGTAGAGGAAGGTGGAGTATCTGCGCTTGTTGATCTCTGTTCTTCATCAGTATCAAAAATGGCACGCTTCATGGCTGCGTTGGCATTGGCTTACATGTTTGACGGGAGAATGGATGAATATGCTTTAGTAGGCACTCCATCTGAAAGTACTTCTAAGAGTGTGAGCTTGGATGGAGCTAGAAGGATGGCTTTGAAACACATTGAAGCTTTTGTTCTTATGTTCTCTGATCCACAAGCATTTGCAGCTGCTGCTGCATCATCTGCTCCTGCTGCATTGGCACAGGTTACTGAAGGTGCACGTATTCAAGAAGCGGGACATCTAAGATGCAGTGGTGCTGAAATTGGAAGATTCATCACCATGCTACGAAATCAATCATCTATACTCAAGGCTTGTGCAGCATTTGCTCTTCTCCAGTTTACAATTCCTGGTGGACGACATGCCATGCACCATGCCAGTCTCATGCAGAACTTGGGAGCACCCCGAGTTCTGCGTGGTGCGGCTGCATCAGCAAACGCCCCACTTGAAGCAAAAATCTTTGCTCGAATTGTTCTTCGCAATCTTGAGTATCACCAGATAGAGCATACAGTGTAG 2757 0.4606 MNRRVRRKVARKSKGNVVQSSSPEVQEEVLHLEPQGVVDWNCLPDDTVIQLLSCLSYRDRASLSSTCKTWRSLGSSPCLWTSLDLRSHRFDADMASSLAPRCVHLQKLRFRGEESANAIIHLRAKNLRELSGDYCRKISDATLSVIVARHESLESLQLGPDFCERISSDAIKAIAHCCPNLSKLRLSGIRDVNGDAINVLAKHCPKLTDIGFIDCLNVDEVALGNVLSVRFLSVAGTSSMKWGVVSHLWHKLPNLIGLDVSRTDIGPSAVFRLLSLTQNLRVLIALNCPILEEDTSFSASKYKNKLLVSLRTDIFKGLASLFFDNTKRGKNVFLDWRTSKNNDKDLNEIIPWLEWMLSHTLLRSAESPQQGLDNFWVEQGGALLLSLMQSSQEDVQERAATGLATFVVIDDENASIDCGRAEAVMRDGGIRLLLGLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGIEILAGLARSMNKLVAEEAAGGLWNLSVGEEHKGAIAEAGGIQALVDLIFKWSSSGDGVLERAAGALANLAADDKCSTEVALAGGVHALVMLARKCKFEGVQEQAARALANLAAHGDSNSNNAAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAASGGVQALVALAQACANASPGLQERAAGALWGLSVSETNSVAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNASNALRIVEEGGVSALVDLCSSSVSKMARFMAALALAYMFDGRMDEYALVGTPSESTSKSVSLDGARRMALKHIEAFVLMFSDPQAFAAAAASSAPAALAQVTEGARIQEAGHLRCSGAEIGRFITMLRNQSSILKACAAFALLQFTIPGGRHAMHHASLMQNLGAPRVLRGAAASANAPLEAKIFARIVLRNLEYHQIEHTV* 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0969 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 510 555 IPR000225 GO:0005515
Vra4g0969 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 641 686 IPR000225 GO:0005515
Vra4g0969 918 Pfam Armadillo/beta-catenin-like repeat 677 713 IPR000225 GO:0005515
Vra4g0969 918 Pfam Armadillo/beta-catenin-like repeat 592 628 IPR000225 GO:0005515
Vra4g0969 918 Pfam Armadillo/beta-catenin-like repeat 500 542 IPR000225 GO:0005515
Vra4g0969 918 Pfam Armadillo/beta-catenin-like repeat 553 584 IPR000225 GO:0005515
Vra4g0969 918 Pfam Armadillo/beta-catenin-like repeat 630 672 IPR000225 GO:0005515
Vra4g0969 918 Pfam Armadillo/beta-catenin-like repeat 463 497 IPR000225 GO:0005515
Vra4g0969 918 Pfam Armadillo/beta-catenin-like repeat 422 456 IPR000225 GO:0005515
Vra4g0969 918 ProSiteProfiles F-box domain profile. 37 83 IPR001810 GO:0005515
Vra4g0969 918 SMART LRR_CC_2 178 203 IPR006553 -
Vra4g0969 918 SMART LRR_CC_2 204 229 IPR006553 -
Vra4g0969 918 SMART LRR_CC_2 124 149 IPR006553 -
Vra4g0969 918 SMART LRR_CC_2 150 177 IPR006553 -
Vra4g0969 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 428 470 IPR000225 GO:0005515
Vra4g0969 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 469 511 IPR000225 GO:0005515
Vra4g0969 918 Gene3D Ribonuclease Inhibitor 33 311 IPR032675 -
Vra4g0969 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 600 642 IPR000225 GO:0005515
Vra4g0969 918 SMART fbox_2 43 83 IPR001810 GO:0005515
Vra4g0969 918 Gene3D - 382 509 IPR011989 -
Vra4g0969 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 685 727 IPR000225 GO:0005515
Vra4g0969 918 SUPERFAMILY RNI-like 39 293 - -
Vra4g0969 918 MobiDBLite consensus disorder prediction 1 24 - -
Vra4g0969 918 Pfam F-box-like 40 86 IPR001810 GO:0005515
Vra4g0969 918 Gene3D - 679 771 IPR011989 -
Vra4g0969 918 SUPERFAMILY ARM repeat 365 744 IPR016024 -
Vra4g0969 918 PANTHER PROTEIN ARABIDILLO 1 1 904 IPR044583 -
Vra4g0969 918 Gene3D - 592 678 IPR011989 -
Vra4g0969 918 SMART arm_5 543 584 IPR000225 GO:0005515
Vra4g0969 918 SMART arm_5 674 714 IPR000225 GO:0005515
Vra4g0969 918 SMART arm_5 715 756 IPR000225 GO:0005515
Vra4g0969 918 SMART arm_5 589 629 IPR000225 GO:0005515
Vra4g0969 918 SMART arm_5 499 542 IPR000225 GO:0005515
Vra4g0969 918 SMART arm_5 630 673 IPR000225 GO:0005515
Vra4g0969 918 SMART arm_5 417 457 IPR000225 GO:0005515
Vra4g0969 918 SMART arm_5 458 498 IPR000225 GO:0005515
Vra4g0969 918 Gene3D - 510 591 IPR011989 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0969 571 758 U-box Gene Family AT2G23140 34.921 1.12e-19 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0969 - - gmx:100819086 1643.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0969 4 16784537 16795369 Vra4g0969 4 16784537 16795369 ECH