Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0963 ATGTCATCCACCACCACGGATTCAGACTCTGCATTTTTGGAACAAATTCAGCAGTATCTCCTTCACAATGATTCAACCATTGTAACACCATCTCAAGCTTTTCCTTGCCCTAGGCATGACACTTGTTCGAATGCAAGTGTCGATTTTTCGCATCCCACTGAAGCGCGTGAGGTGGACGCGCCACCCAAGTGGAGGCGTTACAGGGGTGTGAGGCGACGGCCCTGGGGAAAGTTCGCAGCCGAGATAAGGGACCCAAAGAAAAATGGTGCTAGGGTTTGGCTGGGAACTTACGTGACTGAAGAGGAAGCAGCTTTGGCTTATGACAAAGCTGCCTTCAAGATGCGAGGCCGAAAAGCTAAACTGAATTTTCCTCATCTCATTGACTCGGATATGTCATCGGAGCCACCAAGTGCGGCGGCTCTGAAGCGGAGCTTGCCAGAATCTTGTCCACCGCCACCACCATCATCATCATCATCATCATCATCATCAATGGATGATAGTTGTTGTAAGTCACAAGGGTCAAAGAGGAGAAAGAACTTACTAAATAACTTAGCCAAGAATAGAAGAAGCCAAGCCAAGGTGGTGGAAATGGCTTTAGAAGCAAATGTTGTTCAACAATGGGTGAATGATTTCAGTGATTGCACTCTGATCTGGTGTTCCTAG 663 0.4751 MSSTTTDSDSAFLEQIQQYLLHNDSTIVTPSQAFPCPRHDTCSNASVDFSHPTEAREVDAPPKWRRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYVTEEEAALAYDKAAFKMRGRKAKLNFPHLIDSDMSSEPPSAAALKRSLPESCPPPPPSSSSSSSSSMDDSCCKSQGSKRRKNLLNNLAKNRRSQAKVVEMALEANVVQQWVNDFSDCTLIWCS* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0963 220 CDD AP2 74 126 IPR001471 GO:0003700|GO:0006355
Vra4g0963 220 Gene3D AP2/ERF domain 65 125 IPR036955 GO:0003700|GO:0006355
Vra4g0963 220 MobiDBLite consensus disorder prediction 158 174 - -
Vra4g0963 220 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 1 189 - -
Vra4g0963 220 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Vra4g0963 220 PRINTS Ethylene responsive element binding protein signature 106 126 IPR001471 GO:0003700|GO:0006355
Vra4g0963 220 MobiDBLite consensus disorder prediction 126 174 - -
Vra4g0963 220 SMART rav1_2 66 130 IPR001471 GO:0003700|GO:0006355
Vra4g0963 220 Pfam AP2 domain 66 116 IPR001471 GO:0003700|GO:0006355
Vra4g0963 220 SUPERFAMILY DNA-binding domain 66 125 IPR016177 GO:0003677
Vra4g0963 220 ProSiteProfiles AP2/ERF domain profile. 66 124 IPR001471 GO:0003700|GO:0006355
Vra4g0963 220 PANTHER DNA-BINDING DOMAIN 1 189 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0963 Vra-Chr4 16751464 16752410 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0963 63 129 AP2-EREBP Transcription Factor Family AT2G44840 82.090 3.25e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra4g0963 AP2 2.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0963 K09286 - gmx:102663872 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0712 9 8076861 8077759 Vra4g0963 4 16751464 16752410 PCT