Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0962 ATGATGCTCTGCACCATGTACTTAGAATTCACACAAAGCGCAAAGTTAGCTCAGAATTCAAACATGACTTCAGCCACCACAGATTCCGACTTTGAGTTCTTGGAATCCGTTCGACAATACCTACTCGGACACGATTCCGTCAATCTCATGCCTGCAACTCACCAAGTTGCTTCTCACGATCCACTTTCAAACCCTAAACGTGATGATGATTTGGAGGACATTGTTTTCCGCAGTGAGGATGCAACTGCTGAGGTGGCGCGTCATGTCCACGCCCCACAGGCGTGGAAGCATTACCGAGGTGTGAGGCGCAGGCCATGGGGGAAGTTTGCGGCGGAGATAAGGGATCCAAAGAAGAACGGAACTAGGGTTTGGCTTGGAACTTTTGACACTGAGGAGAAAGCAGCTCTGGCTTACGACAAAGCTGCTTTCAAGATGCGTGGGCAAAAAGCTAAGCTGAATTTTCCTCATCTTATTGATTCTGATAATTTTGAAACATTGTCAGAACCGGTGATGGAAACAACTTGTAAGAGGAAGTTGTCGCAGCAAAGTTTCGAACCATCTTCACCGTCATCGTCGTGTTCAGAAGATAGCTCGGAGTCGCAAGGGACAAAGAGGAGGAAGAACCTCACTCATCTATTGAATAAGTTAGCCAAGAACAGAAGCCAAGCCAAGCTGGCATGTTGA 684 0.4722 MMLCTMYLEFTQSAKLAQNSNMTSATTDSDFEFLESVRQYLLGHDSVNLMPATHQVASHDPLSNPKRDDDLEDIVFRSEDATAEVARHVHAPQAWKHYRGVRRRPWGKFAAEIRDPKKNGTRVWLGTFDTEEKAALAYDKAAFKMRGQKAKLNFPHLIDSDNFETLSEPVMETTCKRKLSQQSFEPSSPSSSCSEDSSESQGTKRRKNLTHLLNKLAKNRSQAKLAC* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0962 227 MobiDBLite consensus disorder prediction 179 198 - -
Vra4g0962 227 PANTHER DNA-BINDING DOMAIN 22 222 IPR044808 GO:0003700|GO:0009873
Vra4g0962 227 SMART rav1_2 97 161 IPR001471 GO:0003700|GO:0006355
Vra4g0962 227 MobiDBLite consensus disorder prediction 179 208 - -
Vra4g0962 227 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 22 222 - -
Vra4g0962 227 PRINTS Ethylene responsive element binding protein signature 98 109 IPR001471 GO:0003700|GO:0006355
Vra4g0962 227 PRINTS Ethylene responsive element binding protein signature 121 137 IPR001471 GO:0003700|GO:0006355
Vra4g0962 227 SUPERFAMILY DNA-binding domain 97 156 IPR016177 GO:0003677
Vra4g0962 227 CDD AP2 96 157 IPR001471 GO:0003700|GO:0006355
Vra4g0962 227 Pfam AP2 domain 97 147 IPR001471 GO:0003700|GO:0006355
Vra4g0962 227 Gene3D AP2/ERF domain 96 156 IPR036955 GO:0003700|GO:0006355
Vra4g0962 227 ProSiteProfiles AP2/ERF domain profile. 97 155 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0962 Vra-Chr4 16745119 16746019 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0962 90 166 AP2-EREBP Transcription Factor Family AT2G44840 73.077 1.19e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra4g0962 AP2 3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0962 K09286 - gmx:548037 304.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0962 4 16745119 16746019 Vra4g0962 4 16745119 16746019 ECH
Vra9g0713 9 8086588 8087184 Vra4g0962 4 16745119 16746019 PCT