Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0961 ATGGATACTTATAACAGCATGAATGCTACTTCAGAATTTGACATGACATTTTCGGAAGATTACATGGTTCACGATGGTTTGAACGACAACAATGTGTTGGTCTGGAATGAGGATTGGTTCTCGGAGAAAGGTGATAAAGCAGAAGAGGTAGTTCGGAGAGGGACGAGGTACAAAGGAGTGCGGCGTAGGGCACATGGAAAGTTTGCTGCAGAGATAAAAGATCCAAACAAAAGTAATAGGGTTTGGCTTGGGACTTATGACACTGAAGAAGAAGCTGCTTTGGCTTATGACAATGCAGCTTTCAAGATTAGAGGCTCCAAAGCCAAGCTCAATTTTCCTCATCTCATTCCACCGTTGGATGAACCAACCACCACCATCGATCACCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCATCCAAGAAAAGGAAGGGACTGGCTGGTTTGCTCAATAAATTAGCACATGAAAAAAACAGAATTTGA 486 0.4239 MDTYNSMNATSEFDMTFSEDYMVHDGLNDNNVLVWNEDWFSEKGDKAEEVVRRGTRYKGVRRRAHGKFAAEIKDPNKSNRVWLGTYDTEEEAALAYDNAAFKIRGSKAKLNFPHLIPPLDEPTTTIDHPPSSSSSSSSSSSKKRKGLAGLLNKLAHEKNRI* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0961 161 SMART rav1_2 56 119 IPR001471 GO:0003700|GO:0006355
Vra4g0961 161 MobiDBLite consensus disorder prediction 125 145 - -
Vra4g0961 161 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Vra4g0961 161 PRINTS Ethylene responsive element binding protein signature 95 115 IPR001471 GO:0003700|GO:0006355
Vra4g0961 161 CDD AP2 55 115 IPR001471 GO:0003700|GO:0006355
Vra4g0961 161 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700|GO:0006355
Vra4g0961 161 MobiDBLite consensus disorder prediction 114 161 - -
Vra4g0961 161 PANTHER DNA-BINDING DOMAIN 36 158 IPR044808 GO:0003700|GO:0009873
Vra4g0961 161 Gene3D AP2/ERF domain 55 114 IPR036955 GO:0003700|GO:0006355
Vra4g0961 161 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 36 158 - -
Vra4g0961 161 SUPERFAMILY DNA-binding domain 56 114 IPR016177 GO:0003677
Vra4g0961 161 Pfam AP2 domain 55 105 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0961 Vra-Chr4 16737694 16738236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0961 52 116 AP2-EREBP Transcription Factor Family AT2G44840 71.212 1.14e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra4g0961 AP2 3.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0961 K09286 - pvu:PHAVU_008G046500g 189.889