Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0958 ATGGAGAGGGTTGCAGAGCCAAAGGTACTTCCTCGGTCATTACCTGTTCTGGTTGAGGTATCTAATGCGCACACTGCTGCAATGAGAGAAGCTGGTCAAAGACTAAATGCGCAGGATGTTTCGGGTGTGAGAGGGATTCCATCAAGAGAAGGGAATCAGTTTTCAAAGTCACGAGATGGCCCCATGACACGTCTAGCCTCCATAAGAGAAGTGGCTCAGTTATCAAATGCACGAATAGTTTTGGTTAGAGAGGATATGGGGTTCGATACACGGTCCTGTCAAGAGCCTCCCTCCCCTGTTCCTACAAGAATGTGGAAAGGAAAGAGCTCTTTACCTGAAGCCGTAGAACTTGTGCCTGATATTCAGACATTGAAGGGTAGCAATGATTCTTTAGGGGAAACTGGTCCAAGTTCATTTGCTGGTGCAAGTCATCCCCCAGAACCTGTTGATACTGATCTTATGAGAACGGTTTATGTGCCAATAGGTCAAACCAAATCTGAGGCAGCATGCTTGATGAAGAGTGTGTCCTTGAAGGGTCCTGGTCCTTTCTTAGAAGATCTTTCAATTTGTGTTCCTGCCAAGAAACAAAGCATGGCTGTTGTTTCTCCTGCAGAAAGCCTGGTTGGTGAGTCAAATGAGACACATAACATACCCTCGCCACTTTCAGGTGCTCGTGCATCTCAGAATACCGAGAACTCTCCTCCTGCTCCAGATTCTGAGGAGAAAGAATGTGTTTGGGATGCATCTTTGCCTCCAAGTGGTAATGTTAGTCCCCTTAGTAGTATTGATAGTACTAGTGTTGTCAGAACAATGAGCATCGTTAATAGTTGTGCAAGTACATACCGGAGTGATGCAGTCACTAGCGATGGAATGCTTAGTTTGGACAGGAATTGTGATAGCACTAAAGGAAGTGTTAGAGGCGAATCACTGGAGAGTGCAAAAACTAGTGCTAGTCGAGCAAGTGATAGCAGTGGCCTCAGTGATGACAGCAACTGGAGTAACATAACTGGTAGTGCCAATAAGCCACACAAGGGAAATGATCCTAGATGGAAGGCTATCCTTGCCATCCGAGCACGGGACGGAATTCTTGGCATGAGTCACTTCAGGTTACTCAAACGACTTGGTTGTGGTGATATTGGAAGTGTGTATCTCTCAGAGCTTAGTGCAACTCGATGCTTTTTTGCAATGAAAGTTATGGACAAGGCATCCTTAGCAAGCAGAAATAAGCTGACTAGGGCTCAGACAGAAAGAGAGATATTGCAGTTGCTTGATCATCCATTTCTGCCTACTTTGTATACACATTTTGAGACCGACAGATTCTGCTGTTTGGTAATGGAATACTGTCCAGGGGGTGATCTTCACACCTTAAGGCAAAGACAACCTGGGAAACATTTCTTGGAGTATGCTGCACGCTTTTATGCAGCAGAGGTTCTGTTGGCACTTGAATACCTTCATATGCTTGGAGTGGTGTACAGAGACCTTAAACCTGAAAACGTACTGGTAAGAGATGATGGTCACATAATGCTCTCAGACTTCGATCTCTCTCTCAGATGTGCTGTTTCACCTACCCTTATCAGAAATATTGACGGGGATCCCTCCAAACGAGCCGGTGGCGCATTCTGTGTGCAGCCGGCTTGTATGGAGCCTTCATCGGTATGCATCCAGCCTTCATGTTTCATGCCTCGCCTTTTTGCTCAGAAAAATAAGAAGTCACGGAGGCCTAAAGCGGATCCTGGCCTGGCATCCAGCACACTTCCTGAGCTTGTTGCAGAACCAACAACTGCTCGGTCCATGTCTTTTGTGGGCACTCACGAATACCTTGCTCCCGAAATCATCAAAGGAGAAGGTCATGGAAGTGCAGTGGATTGGTGGACATTTGGGATTTTCTTGCATGAACTATTATATGGTAAAACCCCTTTCAAAGGGTCAGGAAACCGCGCGACCCTTTTCAACGTAGTAGGCCAGCAGCTCAGATTTCCGGAGTCACCGGCCACCAGTTATGCGAGCCGTGATCTCATCCGGTGCCTGCTGGTGAAGGAGCCGCAGCACCGGCTGGGAGTGAAGAGGGGTGCGACTGAGATCAAACAGCACCCGTTCTTTGAAGGCGTGAACTGGGCGTTGATCAGGTGCAGCACTCCACCAGAAGTTCCAAGAGCAGTTGAATGTGATGTTGTAGCAGCAAAGTTTGAAGCAGTTGATACTGTTGGGGTTGGCATGAACAATAGTAGTAAGAAGATGGGAGGTAATAATGAGATGAAGTCTGGGGGTAAATATCTGGACTTTGAGTTCTTTTAG 2295 0.4684 MERVAEPKVLPRSLPVLVEVSNAHTAAMREAGQRLNAQDVSGVRGIPSREGNQFSKSRDGPMTRLASIREVAQLSNARIVLVREDMGFDTRSCQEPPSPVPTRMWKGKSSLPEAVELVPDIQTLKGSNDSLGETGPSSFAGASHPPEPVDTDLMRTVYVPIGQTKSEAACLMKSVSLKGPGPFLEDLSICVPAKKQSMAVVSPAESLVGESNETHNIPSPLSGARASQNTENSPPAPDSEEKECVWDASLPPSGNVSPLSSIDSTSVVRTMSIVNSCASTYRSDAVTSDGMLSLDRNCDSTKGSVRGESLESAKTSASRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSATRCFFAMKVMDKASLASRNKLTRAQTEREILQLLDHPFLPTLYTHFETDRFCCLVMEYCPGGDLHTLRQRQPGKHFLEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIRNIDGDPSKRAGGAFCVQPACMEPSSVCIQPSCFMPRLFAQKNKKSRRPKADPGLASSTLPELVAEPTTARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPESPATSYASRDLIRCLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRAVECDVVAAKFEAVDTVGVGMNNSSKKMGGNNEMKSGGKYLDFEFF* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0958 764 MobiDBLite consensus disorder prediction 206 262 - -
Vra4g0958 764 MobiDBLite consensus disorder prediction 125 149 - -
Vra4g0958 764 MobiDBLite consensus disorder prediction 293 341 - -
Vra4g0958 764 CDD STKc_phototropin_like 366 718 - -
Vra4g0958 764 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 75 764 - -
Vra4g0958 764 Gene3D Transferase(Phosphotransferase) domain 1 452 519 - -
Vra4g0958 764 Gene3D Transferase(Phosphotransferase) domain 1 594 718 - -
Vra4g0958 764 SUPERFAMILY Protein kinase-like (PK-like) 350 718 IPR011009 -
Vra4g0958 764 MobiDBLite consensus disorder prediction 207 235 - -
Vra4g0958 764 ProSiteProfiles Protein kinase domain profile. 368 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0958 764 Gene3D Phosphorylase Kinase; domain 1 366 451 - -
Vra4g0958 764 SMART serkin_6 368 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0958 764 PANTHER FLIPPASE KINASE 1-RELATED 75 764 - -
Vra4g0958 764 Pfam Protein kinase domain 369 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0958 764 Pfam Protein kinase domain 597 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0958 764 ProSitePatterns Serine/Threonine protein kinases active-site signature. 489 501 IPR008271 GO:0004672|GO:0006468
Vra4g0958 764 MobiDBLite consensus disorder prediction 292 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0958 Vra-Chr4 16678118 16682540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0958 1 764 AGC Kinase Gene Family AT2G44830 65.693 0.0 929
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vra4g0958 Pkinase 6.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0958 - - gmx:100800019 1370.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0958 4 16678118 16682540 Vra4g0958 4 16678118 16682540 ECH
Vra9g0716 9 8121020 8125419 Vra4g0958 4 16678118 16682540 PCT