Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0950 ATGCAATCCATCAAGATTCTAGCCTGCTGGAGGATTCTTTACTGGTTTATTCTGGTTTTTGTAACACAACTTGCTTCTTTCTCCCAAATCCTTTACTTGGCTTCTATTGCTATCTCAGTCACTATTGTTGATGAAGCTGTAGCAGAGAACAGTGAAGCCAATGCACTGCTAAAGTGGAAACAAAGCCTTCACACATCCAGCCAAGATATCTTGTCAACATGGAAAGGTGTTACACCATGCAAATGGGAAGGAATTCATTGTAACAATTCCAAGTCCATCTCCACCATAGATCTTGCAAATTATGGTCTCATAGGTACCCTTAACACCCTCAACTTCTCAGCTTTCCCTAACCTACTCATCCTAAATATCTATAACAACTTCTTTTATGGGACCATTCCACCACAAATTGGTAACATGTCCAGAGTAAATGTTTTGAATCTTTCTACAAATCATTTCATTGGTTCCATCCCTCAACAAGTGTGGACACTAAAGAGTTTACAACGCCTTGATCTGTACCAATGTCAACTAAGTGGGGAGATTCCTAATTACATAGCAAACTTGTCCAACTTGACATATCTAGATTTAGGCATAAACAGTTTTTCTGGCCATATTCCACCAGAGATTGGGAACTTGCACAAGTTGGAGTATCTAGCTATTAGAGAAAATCAACTTCTCGGTTCCATTCCTCAAGAAATTGGAATGTTGACAAAGCTTGGGTCAATGGATTTGTCAGAAAATTCTCTCTGTGGTACTATCCCTGAAACAATAGGTAACATGAGCAGTTTAAGTCAACTTTACATTTCTAACAACTCCCACCTACATGGGCCAATCCCATCGTCCTTATGGAACATGTCCAAGTTGACAGTGCTCAACCTTTATGGCAATAACCATTCTGGATCAATCCCTGCTTCCATAGAAAATTTGGGAAATTTAGATAAACTTGGACTTGATCAAAACCAACTTTCTGGTCCCATTCCTTCCACAGTTGGAAAGTTGACCAAGCTTACCAATTTGTTTTTAAGCTTCAATAATTTTTCTGGACCAATTCCTCCCTCTATAGGAAATTTGATCAATTTGGAAATGCTTGGTCTCGAAAGCAACAATCTCTCAGGAACAATTCCTGCCACAATTCAAAATTTGAAAAGGCTCACCTACTTAGCATTGGCCGACAACAAACTTAATGGCAGTATTTCACAAGTCTTGAATAACAATAATAAATGGCTTTCCGTGTTACTTGATGGGAATGATTTCACAGGCCATTTACCACCTCAAATTTGCTCTGCTGAGTCCCTAGATGCCCTTATTGCTCACAACAACCGTTTCACCGGTCCAGTGCCAGTAAGCTTGAAGAACTGTGCTAGTGTTACTAGACTCCGGTTGGAAGGGAACCAATTGGAAGGAGATATATCACAAGATTTTGGTGTATATCCAAATTTGGAATACATTGATTTGAGCGACAACAAGTTTTACGGCCAAATTTCATCAAACTGGGGTAAGTGTCCTAATCTTGATACCCTAAAGATATCCAACAATAACATTTCTGGTGGTATACCAGTCGAACTTGCGGAGGCAACCAAACTTGGCAAGCTTCACCTTTCTTCTAACCACTTGAAGGGAAAGATTCCAAAGGAATTAGGCAATATGAAATCTCTAATTGAACTCAAGATTAGCAACAACTATCTTTCTGGAGACATTCCCAAGGAAATTGGATCACTGCAAATTCTTGAAGAATTGGATCTTGGAGATAACCAGTTGAGTGGAAAAATACCAGCAGAAGTTGTAGAGTTGCCAAAGTTGCGAAAGTTGACCTTGAGCAATAATAAAATAAACGGAAATATTCCCTTAGAGTTTCGCCAACTTCAGCCTCTTGAATACCTTGATCTTAGTGGGAATTTGTTGACTGGAACAATACCAAGGCAACTTGGAGCGGTGATCAAACTGAACTGTTTGAATCTCTCTCGCAACAATCTTTCTGGAAGTATTCCATCCAGTTTTGAGGGCATGTCAAATTTGATTTCTGTCAACATATCATACAATCAGTTAGAAGGGCCACTTCCCAAAAATGGAGCCTTTCTTAATGCTTCAATTGAATCATTGAAAAATAACACAGGTTTGTGTGGGAACTTCACTGGGTTGATGCTTTGCCCAGCCAACCGCAATGAAACGAAGCACAAGGACATTCTTCTGATATTACTTCTCATGTTGGGTGCTCTTGCATTAATATTGTGTGGGGTGGGTGTTTCAATGTATATTCTTTGTCGAAAAGCAAGGAAGAAAAAAGCCCAAGCTAAAGGAAAAGAAGTATCAGAAAATGCATTGTCTCGAGAAGTGTTTTCCGTTTGGAGTCGTGATGGAAAAGTTATGTTTGAAACTATCATTGAAGCTACCCACAATTTTAATGAAGAATATCTCATAGGTGTTGGAGGACAGGGAAATGTTTACAGGGCTGAGTTCCCTTCAGGTGAGGTCTATGCGGTGAAGAAACTTCATCAAGAAACAGATGGAGAGAAGCCTAATTTTAAAGCTTTTGAGAATGAAATTCAAGCTTTGACCGAAATCAGGCACCGTAATATTGTAAAGCTCTGCGGGTTTTGCTCACATCCACGATTCACATTTTTGGTTTATAAGTTCATGGAAGGGGGTAGCTTGGATCAAACCCTAAGCAATGAGAAAAAAGCATCTGAATTTGATTGGGAAAAGAGGGTGAATGTTGTGAAAGGTGTGGCAAATGCTTTATCCTACATGCATCATGATTGCTCACCTCCAATAATCCATCGTGACATATCGAGCAAGAATGTTCTTCTTGATTCACAGTACGAAGCTCGTGTCACTGATTTTGGAACAGCTAAGATTCTAAAGCCTGGTTGTTCTTGGACGACGTTTGAAGGCACATTAGGGTATGCAGCTCCAGAGTTTGCCCAAACTATGGAAGTGACTGAGAAATGTGATGTATTCAGTTTTGGTGTGCTTTGCCTAGAAATCATCATGGGGAAACATCCGGGGGATCTCGTTTCTTCGTTGTTATCTTCATCTTCAGCAGCAATAACTCATAATTTGCTACTACTGGATGTGCTAGACCAAAGGCCTCCTCATCCTCTTAAATCAGTTGTCGGGGATGTCATTTTGGTTTCAAGCTTGGCATTTTCTTGCTTGAGTGAAAATCCAAGTTCTCGCCCAACAATGGCTGAAGTCTCCAAAATGTTAATGATGGGGAAATCCTCATTACCAGCTCAGTTACCCATGATTAGACTTGGACAACTCCTCTAA 3267 0.3998 MQSIKILACWRILYWFILVFVTQLASFSQILYLASIAISVTIVDEAVAENSEANALLKWKQSLHTSSQDILSTWKGVTPCKWEGIHCNNSKSISTIDLANYGLIGTLNTLNFSAFPNLLILNIYNNFFYGTIPPQIGNMSRVNVLNLSTNHFIGSIPQQVWTLKSLQRLDLYQCQLSGEIPNYIANLSNLTYLDLGINSFSGHIPPEIGNLHKLEYLAIRENQLLGSIPQEIGMLTKLGSMDLSENSLCGTIPETIGNMSSLSQLYISNNSHLHGPIPSSLWNMSKLTVLNLYGNNHSGSIPASIENLGNLDKLGLDQNQLSGPIPSTVGKLTKLTNLFLSFNNFSGPIPPSIGNLINLEMLGLESNNLSGTIPATIQNLKRLTYLALADNKLNGSISQVLNNNNKWLSVLLDGNDFTGHLPPQICSAESLDALIAHNNRFTGPVPVSLKNCASVTRLRLEGNQLEGDISQDFGVYPNLEYIDLSDNKFYGQISSNWGKCPNLDTLKISNNNISGGIPVELAEATKLGKLHLSSNHLKGKIPKELGNMKSLIELKISNNYLSGDIPKEIGSLQILEELDLGDNQLSGKIPAEVVELPKLRKLTLSNNKINGNIPLEFRQLQPLEYLDLSGNLLTGTIPRQLGAVIKLNCLNLSRNNLSGSIPSSFEGMSNLISVNISYNQLEGPLPKNGAFLNASIESLKNNTGLCGNFTGLMLCPANRNETKHKDILLILLLMLGALALILCGVGVSMYILCRKARKKKAQAKGKEVSENALSREVFSVWSRDGKVMFETIIEATHNFNEEYLIGVGGQGNVYRAEFPSGEVYAVKKLHQETDGEKPNFKAFENEIQALTEIRHRNIVKLCGFCSHPRFTFLVYKFMEGGSLDQTLSNEKKASEFDWEKRVNVVKGVANALSYMHHDCSPPIIHRDISSKNVLLDSQYEARVTDFGTAKILKPGCSWTTFEGTLGYAAPEFAQTMEVTEKCDVFSFGVLCLEIIMGKHPGDLVSSLLSSSSAAITHNLLLLDVLDQRPPHPLKSVVGDVILVSSLAFSCLSENPSSRPTMAEVSKMLMMGKSSLPAQLPMIRLGQLL* 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0950 1088 SMART LRR_typ_2 187 211 IPR003591 -
Vra4g0950 1088 SMART LRR_typ_2 620 644 IPR003591 -
Vra4g0950 1088 SMART LRR_typ_2 668 693 IPR003591 -
Vra4g0950 1088 SMART LRR_typ_2 380 403 IPR003591 -
Vra4g0950 1088 SMART LRR_typ_2 235 259 IPR003591 -
Vra4g0950 1088 SMART LRR_typ_2 308 332 IPR003591 -
Vra4g0950 1088 SMART LRR_typ_2 596 619 IPR003591 -
Vra4g0950 1088 SMART LRR_typ_2 548 572 IPR003591 -
Vra4g0950 1088 SMART LRR_typ_2 356 379 IPR003591 -
Vra4g0950 1088 SMART LRR_typ_2 163 186 IPR003591 -
Vra4g0950 1088 ProSitePatterns Tyrosine protein kinases specific active-site signature. 923 935 IPR008266 GO:0004672|GO:0006468
Vra4g0950 1088 Gene3D Ribonuclease Inhibitor 297 408 IPR032675 -
Vra4g0950 1088 SUPERFAMILY Protein kinase-like (PK-like) 786 1069 IPR011009 -
Vra4g0950 1088 Gene3D Ribonuclease Inhibitor 409 724 IPR032675 -
Vra4g0950 1088 Pfam Protein kinase domain 800 1066 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0950 1088 PANTHER LRR RECEPTOR-LIKE KINASE 184 263 - -
Vra4g0950 1088 PANTHER LRR RECEPTOR-LIKE KINASE 263 1087 - -
Vra4g0950 1088 PANTHER LRR RECEPTOR-LIKE KINASE 15 191 - -
Vra4g0950 1088 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 15 191 - -
Vra4g0950 1088 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 263 1087 - -
Vra4g0950 1088 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 184 263 - -
Vra4g0950 1088 SUPERFAMILY L domain-like 51 311 - -
Vra4g0950 1088 Gene3D Phosphorylase Kinase; domain 1 757 877 - -
Vra4g0950 1088 Pfam Leucine rich repeat 550 609 IPR001611 GO:0005515
Vra4g0950 1088 Pfam Leucine rich repeat 477 537 IPR001611 GO:0005515
Vra4g0950 1088 Pfam Leucine rich repeat 334 393 IPR001611 GO:0005515
Vra4g0950 1088 SUPERFAMILY RNI-like 290 691 - -
Vra4g0950 1088 Pfam Leucine rich repeat N-terminal domain 50 88 IPR013210 -
Vra4g0950 1088 Gene3D Transferase(Phosphotransferase) domain 1 878 1077 - -
Vra4g0950 1088 Pfam Leucine Rich Repeat 286 308 IPR001611 GO:0005515
Vra4g0950 1088 Pfam Leucine Rich Repeat 165 187 IPR001611 GO:0005515
Vra4g0950 1088 Pfam Leucine Rich Repeat 646 667 IPR001611 GO:0005515
Vra4g0950 1088 Gene3D Ribonuclease Inhibitor 48 198 IPR032675 -
Vra4g0950 1088 Gene3D Ribonuclease Inhibitor 199 296 IPR032675 -
Vra4g0950 1088 ProSiteProfiles Protein kinase domain profile. 799 1070 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0950 Vra-Chr4 16509283 16513386 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0950 29 970 Receptor kinase-like Gene Family AT4G08850 43.274 0.0 717
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra4g0950 Pkinase 4.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0950 - - vra:106759489 1629.77