Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0946 ATGGAATCCATCAAGATTCTACCCTTATGGAGGATTCTCTCTTACTTTCTTTTGGCAATTCTAACACACTCTTCACTCCAACTTGCTTGGTTTTCCAAAACAGTAGTTTTGGCCTCTGCTGCCAGCGCAAGAACTGTTGGTGATGAAGCTGCAACTGATAACAGTGAGGCAAATGCACTGTTAAAGTGGAAACACAGCTTTGATAACAGCAGCCAAGATCTCTTATCAACTTGGACAGGTTCTACTTCATGCCAATGGGAAGGAATTCATTGTAACAATTCCAAGTCCATCTCCACCATAGATCTTTCAAATTATGGTCTCATAGGTACCCTTCACACCCTCAACTTCTCAGCTTTTCCTAACCTACTCATCCTAAATATCTTTAACAACTCCTTTTATGGGACCATTCCACCACAAATTGGTAACATGTCCAGAGTAAAAATTTTGAATCTTTCTACAAATTATTTCAATGGTTCCATCCCTCAACAAGTGTGGACACTAAGGAGTTTACAAGGCCTTGATCTGGACAAATGTCAACTAAGTGGTGAGATTCCTAATTCCATAGCAAACCTTTCCAATTTGACATATCTAGATTTAGGCCTAAACAGTTTTTCTGGCCCTATTCCACCAGAGATTGGAAAGTTGTACAAGGTAGAGTTTCTAAATCTTAAAATTAATAAATTTTCTGGTTCCATTCCTCAAGAAATTTCAATGTTGAGAAACCTTAAGAATATTGATTTGTCAAGAAATTCTCTCTCTGGTACTATCCCTGAAACAATAGGAAACATGTCTAGTTTAAATTTGCTTCGCATTTCCAATAACTCCCTTTTATCTGGGCCAATTCCATCCTCCTTATGGACCATGTCTAACTTGACCTTGCTCTTTCTTGATAACAATAATCTTTCTGGATCAATCCCTGCTTCCATAGAAAACTTGGCCAATTTAGATACACTTGGACTTGATTACAACCACCTTTCTGGACCTATTCCTTCCACAATTGGAAACCTGACCAAGCTCACCAGGTTGTTTTTACGCTCTAACAATCTTTCTGGATCAATTCCTCCCTCTATAGGAAACTTGATCCATTTGAAAGTACTTAGTCTCCAAATCAACAATCTCACCGGAACAATTCCTGCCACAATTGGAAATTTGAAAAACCTCACTATTTTAGAACTGTCCTTCAACAAACTTAATGGCAGTGTTTCACAAGTCTTGAATAACATTCGGAACATGTCTTTTGTGTTACTTGCTCAGAATGATTTCACAGGACATTTACCACCACAAATTTGCTCTGCTGGGTCCCTAAGCTCCCTTAGTGCTCACCACAACCGTTTTACCGGTCCGGTGCCAATAAGCTTGAAGAACTGTTCTAGTGTTACTAGACTCAGGTTGGAAGGGAACCAATTGGAAGGAGATATCTCACAAGATTTTGGTGTATATCCAAATTTGGAATACATTGATTTGAGCGACAACAAGTTTTACGGCCAAATTTCACCAAACTGGGGGAAGTGTCCTAATCTTGGTACCTTAAAGATATCCAACAATAACATTTCTGGTGTTATACCAGTCGAACTTGCTGAGGCAACCAAACTAGGCAAGCTTCACCTTTCTTCTAATAACTTGAAGGGAAAGATTCCAAAGGAATTAGGGAATATGAAATTGTTAATTGAACTTGAGATTAGCAACAACCACCTTTCTGGTGACATTCCCAAAGAAATCGGATCACTGCAAATTCTTGAAGATTTGGATCTTGGAGGTAACCAGTTGAGTGGAACAATACCGAGAGAAGTTGTAGAATTGCCCAACTTACGAAGGTTGACTTTGAGCAATAACAAAATAAACGGAACTATTCCCCTGGAGTTTCGCAAATTTCAGCCTCTTGAATATCTTGATCTTAGTGGGAATATGATGAGTGGAACAATACCAAAAGAGCTTGGAGAGGTGATGAAACTGCAGTGGCTTAATCTCTCTCACAATAATCTTTCTGGAAATATTCCATCCAGTTTTGATGGCCTTTCAGGTTTGATTTCTGTCAACATATCATACAACCAGTTAGAAGGGCCACTTCCAAATAACGAAGCCTTTCTTAATGCTTCAATTGAATCATTGAAAAATAACAGAGACTTGTGTGGCAATGTCACTGGCTTAATGCATTGCCCAACCAACCACAGTCGGAAGAGGCACAAGGGCATTCAAAGAGCATTATTTATTTTCTTGGGTGCTCTTGTTCTAGTGTTATGTGGGGTGTCAGTTTCAATGTATATTCTCTGTCGAAAAGCAAGAAAGGAAGATATACATGGTAAAGAAAATGTGCATTCCGGAAAGAAACTCACTGGAGAAGTGTTTTCCATATGGAGTCACGATGGAAAAATTATGTTTGAACACATCATTGAAGCAACCGATAATTTCAACGAAAAACATCTGATTGGACTTGGAGGGCAAGGATCGGTTTACAAAGCAGAGATGTCTACAGGCCATGTTTTTGCGGTGAAGAAACTTCACATGGAAACAGATGAAGAGACGCCTAATTTTAAAGCTTTTGAAAACGAAATTCAAGCTTTGACAGAAATCAGGCACCGTAACATTGTAAAGCTATGTGGATTTTGCTCACATTCACGCTTCTCCTTTTTGGTCTACGAGTTCTTGGAAGGGGGTAGCTTGGATCAAGTACTAATCAATGAAAAAAAAGCAGCTTCATTTTACTGGGAACAGAGAGTAAATGTTGTTAAAGGTGTGGCACATGCTTTATCCTATATGCATCAGGATTGCTCACCACCCATAATTCATCGAGACATATCCAGCAAGAATATTCTTTTAGATTCACAAAAAGAACCTCATGTCTCTGATTTTGGGACAGCTAAGATTCTAAAACCTGGTTCAAGCACTTGGACCACATTTGCAGGCACCTTTGGGTATGCAGCTCCAGAGCTTGCCCAGACCATGGAAGTGACTGAGAAATGTGATGTATTCAGTTTTGGAGTGCTTTGTCTAGAAATCATCATGGGGAAACATCCGGGGGATCTCGTTTCTTCCTTGTTATCTTCATCTTCAGCAGCAATAACTCATAACTTGCTACTGATTGATGTGATAGACCAGAGACCTCCTCATCCTCTTAAACCGGTTGTTGGGGATGTCATTTTGGTTGCAATCTTGGCATTTTCTTGCTTGAATGAAAATCCATGTTCTCGACCAACAATGGATCAAGTGTCCAAAAAGCTTATGATGGGTAAGTCACCTTTAGCAAATGAGTTCCCTAATATCAGACTTGCACAACTCCTCCAAAGCAGTATTTAA 3294 0.394 MESIKILPLWRILSYFLLAILTHSSLQLAWFSKTVVLASAASARTVGDEAATDNSEANALLKWKHSFDNSSQDLLSTWTGSTSCQWEGIHCNNSKSISTIDLSNYGLIGTLHTLNFSAFPNLLILNIFNNSFYGTIPPQIGNMSRVKILNLSTNYFNGSIPQQVWTLRSLQGLDLDKCQLSGEIPNSIANLSNLTYLDLGLNSFSGPIPPEIGKLYKVEFLNLKINKFSGSIPQEISMLRNLKNIDLSRNSLSGTIPETIGNMSSLNLLRISNNSLLSGPIPSSLWTMSNLTLLFLDNNNLSGSIPASIENLANLDTLGLDYNHLSGPIPSTIGNLTKLTRLFLRSNNLSGSIPPSIGNLIHLKVLSLQINNLTGTIPATIGNLKNLTILELSFNKLNGSVSQVLNNIRNMSFVLLAQNDFTGHLPPQICSAGSLSSLSAHHNRFTGPVPISLKNCSSVTRLRLEGNQLEGDISQDFGVYPNLEYIDLSDNKFYGQISPNWGKCPNLGTLKISNNNISGVIPVELAEATKLGKLHLSSNNLKGKIPKELGNMKLLIELEISNNHLSGDIPKEIGSLQILEDLDLGGNQLSGTIPREVVELPNLRRLTLSNNKINGTIPLEFRKFQPLEYLDLSGNMMSGTIPKELGEVMKLQWLNLSHNNLSGNIPSSFDGLSGLISVNISYNQLEGPLPNNEAFLNASIESLKNNRDLCGNVTGLMHCPTNHSRKRHKGIQRALFIFLGALVLVLCGVSVSMYILCRKARKEDIHGKENVHSGKKLTGEVFSIWSHDGKIMFEHIIEATDNFNEKHLIGLGGQGSVYKAEMSTGHVFAVKKLHMETDEETPNFKAFENEIQALTEIRHRNIVKLCGFCSHSRFSFLVYEFLEGGSLDQVLINEKKAASFYWEQRVNVVKGVAHALSYMHQDCSPPIIHRDISSKNILLDSQKEPHVSDFGTAKILKPGSSTWTTFAGTFGYAAPELAQTMEVTEKCDVFSFGVLCLEIIMGKHPGDLVSSLLSSSSAAITHNLLLIDVIDQRPPHPLKPVVGDVILVAILAFSCLNENPCSRPTMDQVSKKLMMGKSPLANEFPNIRLAQLLQSSI* 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0946 1097 SUPERFAMILY L domain-like 442 711 - -
Vra4g0946 1097 PANTHER LRR RECEPTOR-LIKE KINASE 193 266 - -
Vra4g0946 1097 PANTHER LRR RECEPTOR-LIKE KINASE 15 197 - -
Vra4g0946 1097 PANTHER LRR RECEPTOR-LIKE KINASE 267 1092 - -
Vra4g0946 1097 ProSiteProfiles Protein kinase domain profile. 803 1075 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0946 1097 Gene3D Ribonuclease Inhibitor 207 304 IPR032675 -
Vra4g0946 1097 Gene3D Ribonuclease Inhibitor 52 206 IPR032675 -
Vra4g0946 1097 Gene3D Transferase(Phosphotransferase) domain 1 882 1083 - -
Vra4g0946 1097 SMART LRR_sd22_2 288 314 - -
Vra4g0946 1097 SMART LRR_sd22_2 239 265 - -
Vra4g0946 1097 SMART LRR_sd22_2 384 410 - -
Vra4g0946 1097 SMART LRR_sd22_2 576 599 - -
Vra4g0946 1097 SMART LRR_sd22_2 336 362 - -
Vra4g0946 1097 SMART LRR_sd22_2 600 629 - -
Vra4g0946 1097 Pfam Leucine rich repeat 601 661 IPR001611 GO:0005515
Vra4g0946 1097 Pfam Leucine rich repeat 481 541 IPR001611 GO:0005515
Vra4g0946 1097 ProSiteProfiles Leucine-rich repeat profile. 650 672 IPR001611 GO:0005515
Vra4g0946 1097 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 267 1092 - -
Vra4g0946 1097 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 15 197 - -
Vra4g0946 1097 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 193 266 - -
Vra4g0946 1097 ProSitePatterns Tyrosine protein kinases specific active-site signature. 927 939 IPR008266 GO:0004672|GO:0006468
Vra4g0946 1097 SMART LRR_typ_2 552 576 IPR003591 -
Vra4g0946 1097 SMART LRR_typ_2 648 671 IPR003591 -
Vra4g0946 1097 SMART LRR_typ_2 600 623 IPR003591 -
Vra4g0946 1097 SMART LRR_typ_2 239 263 IPR003591 -
Vra4g0946 1097 SMART LRR_typ_2 384 407 IPR003591 -
Vra4g0946 1097 SMART LRR_typ_2 336 360 IPR003591 -
Vra4g0946 1097 SMART LRR_typ_2 288 312 IPR003591 -
Vra4g0946 1097 SMART LRR_typ_2 191 215 IPR003591 -
Vra4g0946 1097 Pfam Protein kinase domain 803 1071 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0946 1097 SUPERFAMILY Protein kinase-like (PK-like) 788 1073 IPR011009 -
Vra4g0946 1097 ProSiteProfiles Leucine-rich repeat profile. 602 623 IPR001611 GO:0005515
Vra4g0946 1097 SUPERFAMILY L domain-like 83 398 - -
Vra4g0946 1097 Gene3D Ribonuclease Inhibitor 305 414 IPR032675 -
Vra4g0946 1097 Gene3D Phosphorylase Kinase; domain 1 766 881 - -
Vra4g0946 1097 Pfam Leucine rich repeat N-terminal domain 54 92 IPR013210 -
Vra4g0946 1097 Gene3D Ribonuclease Inhibitor 416 728 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0946 Vra-Chr4 16476067 16480084 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0946 56 975 Receptor kinase-like Gene Family AT4G08850 44.313 0.0 718
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra4g0946 Pkinase 9.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0946 - - vra:106759489 2136.3