Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0943 ATGGAATGCACGTTTGAAAGGGAAAAGTTCACGCTGGTTCTGTTCATCTGTGTCTTTCTAACACTCTTGGGGCCTCAAGCTGCTGCTCAAGACAGTGAAGCAAATGCTTTGTTGAAGTGGAAACACAGCTTTGACAACCACAGCCAAGCTCTGTTATCAACATGGAGAGGTAATAATCCATGCACATGGGAAGGAATTCAGTGTGACAAATCCAAGTCTGTATCCACCATAGATCTCCCTAGTTATGGACTTAAAGGTACACTCCACACTCTTAGCTTCTCCATTTTGCCTAACCTTCTCAGCCTCAATATCTACCAAAACTCCTTTCATGGGACCATTCCTCCACAGATTGGTAACTTAACCAAAGTAAATGTTTTAAATTTTTCTTTAAATTCCTTCGACGGTTCCATCCCTCAAGAAATGTGGACACTGGGGAGTTTACATAGCCTTGATCTTTCCTTGTGTCACCTGAGTGGAGAGCTTCCGAATTCCATGGCAAACTTGTCCAATCTGTCATTTCTAGATTTAAGTGGCAACAATTTTTCTAGCACCATTCCTCCTGGGATTGGAAAGTTGAATAAGTTGCAGTATCTGGGTATGGGAGATTGTAACCTTTTTGGTTCCATTCCTCAAGAAATTGGAATGTTGACAAACCTTGAACTTATTGATTTGTCAAGAAACTCTCTTTCGGGTACCATCCCTGAAACAATAGGTAACATGAGCAGTTTAAATCGACTCTACCTTTCTAATAACTCCCTAATATCTGGGAAAATCCCATCCTCCATGTGGAGCATGTCTAACTTGACCTTGCTCTTCCTTGAAGCCAATAATCTTTCTGGAACAATCCCAGCTTCCATAGAAAATCTGGCCAATTTAGAGAAACTTGGACTTGATACGAATCAATTTTCCGGACCCATTCCTTCCACCATTGGAAACTTGACAAAGCTCACCATGCTGTATTTAGGCTTTAATAATCTTTCTGGATCAATTCCTCCCTCTATAGGTAATTTGATCAATTTGGGTGCCCTTAGTCTCCAAGCAAACAAACTCTCTGGACCAATTCCTGATACAGTTGGAAATTTGAAAAAGCTCACCGTTTTGGAATTGTCCAGTAACAAACTTAATGGCAGCATTCCACTAGGCTTGAATGACATTACCAACTGGCTATCCTTGTTACTAGATGAGAATGATTTCACGGGCCATTTACCTCCTCAAATTTGCTCTGCTGGTTCACTACAGTTCTTCAATGTTTTTGGCAACCGTTTCACGGGTCCAGTGCCTAGAAGCTTAAAGAATTGCTCTAGTATTGCTAGACTCAGGGTGGAAGGAAACCAATTGGAAGGAGATATAGCACAAGATTTTGGTGTATATCCAAACTTGGTGTATATTGATTTGAGTGACAATAAATTTCATGGTCACATTTCACCAAACTGGGGAAAGTGCCACAATCTTTATACCTTAAAGATATCCAACAATAATATTTCCGGGGGTATACCAATAGAACTTGCCGAGGCAAGCAAGCTAGGTGTGCTTCACCTTTCTTCTAATCACTTGAGTGGAAAGCTTCCAAAGGAATTAGGGAATTTGAAATCGTTATTTCAACTCAAGATTAGCAATAACCATCTTTCTGGAAACATTCCAACAGAAATTGGATTACTGCAAAATCTTGAAGATTTGGATCTGGGAGATAACGAGTTGAGTGGCCCAATACCAATAGAAGTTGTGAAATTGCACAAGTTACGGAATTTGAATTTGAGCAAAAACAATATTGGTGGAAGCATTCCTTCTCAGTTTAGCCAATATTTAGTATCTCTTGATCTTAGTGCCAATTTGTTGATTGGAACAATACCAACAAATATTGGAGAGTTGCAAAGGTTGTTCATGTTGAATCTCTCACACAATAGTCTTTCTGGTACCATTCCTTCCACTTTTAGCAGAGCATTGAGTATCGTCAACATATCGGACAATCAATTAGAAGGGCCAATTCCAAATATTCCACCTTTTCTTGATGCTCCAATTGAATCATTGAAAAACAATAAAGGCTTATGTGGTAATGTCAGGGTATTGGATCTTTGTCCAACCAATCATAGTCGAAAGAGCAACAAAGTGATCCTAGTGACATTCCTTAGTGTAGGAGCGGTAATACTTGTTCTATGTGGGGTGGCACTTTCAATGTACATTTTTTGTCGTGGTAAAAGAAAGGGAAAAAGTCATTCTAATTCTGAAGAAGCGCCAAGGAAGGCACTCTTTTCCGTATGGAGCTACGATGGAAAAATCATGTTTGAAAATATCATTGAAGCTACAGAGAATTTTGATGACAAATATCTCATTGGAGCAGGAAGTCAAGGATATGTTTACAAGGTGGTGTTACCTTCGGGTTTGGTTGTTGCTGTGAAGAAACTTCACTCAGCGATAGATGAGGAAATGTCAGAATTCAATTCAAAGGCTTTTGCAAGTGAGATTAAAGCATTGACAGAAATCAAACATCGGAACATTATAAAGTTGCATGGATTTTGCTCACATTCACAGGTCTCATTCTTGGTCTATGAGTTCATGGAAGGGGGTAGCTTGGATCAGTTGCTGAACAAAGATACAGAAGCAACTGCATTTGATTGGGAAAAGAGGGTGAATGTTGTTAAAGGCTTGGCCAATGCTTTATCTTATTTGCATCATGATTGCTCACCTCCAATTGTTCATCGAGACATATCAAGTAAAAATGTTCTTTTGGATCTTGAGTACGAAGCTCATGTTTCTGACTTCGGGACTGCTAAGTTTTTGAAGCCTAGTTCAGGAAGTTGGACTGGATTCGCAGGAACCTTTGGGTATGCTGCTCCAGAGTTGGCCCAGACAATGCAAGTGAATGAGAAATGTGATGTTTACAGCTTTGGAGTACTTGCTTTGGAAATCATTATGGGAAAACATCCAAGAGATCTCCTTTCTCAGTTTGTGTCACCATCTATGACACAAATTTTTAAGGATTTGCTATTGGTTGATGTTTTAGATCAACGGCCTCCTCAACCTAAAAATCCAATTGATGGGGAGGTGATCTTAATCGTAAGGTTAGCACTTGCTTGCTTGAGTCAAAATCCACGTTCTCGCCCAACCATGGAACAAGTATCCAAGGCATTTGGAACAGGAAAATCACCTTCGGCTGACCTATTTCCTAGGATCACTTTGGGACAACTCTGCTGA 3192 0.3994 MECTFEREKFTLVLFICVFLTLLGPQAAAQDSEANALLKWKHSFDNHSQALLSTWRGNNPCTWEGIQCDKSKSVSTIDLPSYGLKGTLHTLSFSILPNLLSLNIYQNSFHGTIPPQIGNLTKVNVLNFSLNSFDGSIPQEMWTLGSLHSLDLSLCHLSGELPNSMANLSNLSFLDLSGNNFSSTIPPGIGKLNKLQYLGMGDCNLFGSIPQEIGMLTNLELIDLSRNSLSGTIPETIGNMSSLNRLYLSNNSLISGKIPSSMWSMSNLTLLFLEANNLSGTIPASIENLANLEKLGLDTNQFSGPIPSTIGNLTKLTMLYLGFNNLSGSIPPSIGNLINLGALSLQANKLSGPIPDTVGNLKKLTVLELSSNKLNGSIPLGLNDITNWLSLLLDENDFTGHLPPQICSAGSLQFFNVFGNRFTGPVPRSLKNCSSIARLRVEGNQLEGDIAQDFGVYPNLVYIDLSDNKFHGHISPNWGKCHNLYTLKISNNNISGGIPIELAEASKLGVLHLSSNHLSGKLPKELGNLKSLFQLKISNNHLSGNIPTEIGLLQNLEDLDLGDNELSGPIPIEVVKLHKLRNLNLSKNNIGGSIPSQFSQYLVSLDLSANLLIGTIPTNIGELQRLFMLNLSHNSLSGTIPSTFSRALSIVNISDNQLEGPIPNIPPFLDAPIESLKNNKGLCGNVRVLDLCPTNHSRKSNKVILVTFLSVGAVILVLCGVALSMYIFCRGKRKGKSHSNSEEAPRKALFSVWSYDGKIMFENIIEATENFDDKYLIGAGSQGYVYKVVLPSGLVVAVKKLHSAIDEEMSEFNSKAFASEIKALTEIKHRNIIKLHGFCSHSQVSFLVYEFMEGGSLDQLLNKDTEATAFDWEKRVNVVKGLANALSYLHHDCSPPIVHRDISSKNVLLDLEYEAHVSDFGTAKFLKPSSGSWTGFAGTFGYAAPELAQTMQVNEKCDVYSFGVLALEIIMGKHPRDLLSQFVSPSMTQIFKDLLLVDVLDQRPPQPKNPIDGEVILIVRLALACLSQNPRSRPTMEQVSKAFGTGKSPSADLFPRITLGQLC* 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0943 1063 ProSitePatterns Tyrosine protein kinases specific active-site signature. 897 909 IPR008266 GO:0004672|GO:0006468
Vra4g0943 1063 Gene3D Ribonuclease Inhibitor 182 276 IPR032675 -
Vra4g0943 1063 Gene3D Ribonuclease Inhibitor 29 181 IPR032675 -
Vra4g0943 1063 Gene3D Phosphorylase Kinase; domain 1 732 851 - -
Vra4g0943 1063 Gene3D Transferase(Phosphotransferase) domain 1 852 1050 - -
Vra4g0943 1063 ProSiteProfiles Protein kinase domain profile. 771 1054 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0943 1063 SMART LRR_sd22_2 265 291 - -
Vra4g0943 1063 SMART LRR_sd22_2 216 242 - -
Vra4g0943 1063 SMART LRR_sd22_2 553 585 - -
Vra4g0943 1063 SMART LRR_sd22_2 361 384 - -
Vra4g0943 1063 SMART LRR_sd22_2 313 339 - -
Vra4g0943 1063 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Vra4g0943 1063 Gene3D Ribonuclease Inhibitor 385 693 IPR032675 -
Vra4g0943 1063 Gene3D Ribonuclease Inhibitor 277 384 IPR032675 -
Vra4g0943 1063 Pfam Protein kinase domain 773 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0943 1063 SUPERFAMILY RNI-like 77 384 - -
Vra4g0943 1063 Pfam Leucine rich repeat 218 278 IPR001611 GO:0005515
Vra4g0943 1063 SUPERFAMILY RNI-like 343 694 - -
Vra4g0943 1063 SMART LRR_typ_2 265 289 IPR003591 -
Vra4g0943 1063 SMART LRR_typ_2 313 337 IPR003591 -
Vra4g0943 1063 SMART LRR_typ_2 216 240 IPR003591 -
Vra4g0943 1063 SMART LRR_typ_2 96 120 IPR003591 -
Vra4g0943 1063 SMART LRR_typ_2 168 192 IPR003591 -
Vra4g0943 1063 SMART LRR_typ_2 361 385 IPR003591 -
Vra4g0943 1063 SMART LRR_typ_2 529 553 IPR003591 -
Vra4g0943 1063 SMART LRR_typ_2 577 600 IPR003591 -
Vra4g0943 1063 SMART LRR_typ_2 623 647 IPR003591 -
Vra4g0943 1063 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 243 1062 - -
Vra4g0943 1063 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 161 243 - -
Vra4g0943 1063 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 15 173 - -
Vra4g0943 1063 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 161 243 - -
Vra4g0943 1063 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 243 1062 - -
Vra4g0943 1063 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 15 173 - -
Vra4g0943 1063 SUPERFAMILY Protein kinase-like (PK-like) 757 1041 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0943 Vra-Chr4 16450727 16454481 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0943 1 945 Receptor kinase-like Gene Family AT4G08850 43.821 0.0 728
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra4g0943 Pkinase 5.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0943 - - gmx:100814634 1425.99