Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0940 ATGGAAGGAGAGAGAGCTGCTGCTACCAATTATGACCTTCAAGTTTCCTTCTCCAACACCCCACAACCCATACACGAATTGGGTTTTGTTCACTATGAAGAAAACCAGCTCCTTGGTTTCTTGTCACCCTCTTCACAATCTCAATCCTTAAACTCCCATGTAGTTGTTACTTCTGCCACTACAACTGCTCCAACCATCGGATTCATGAATCACACCAAAACTTGGAATAACGACCAGGTCCAAACTCTGGATCCAAAGCCTGTCGATGAAGAAAACTGCACTGGAAACGCTACTGAAGGCAACAACAACTCTTGGTGGAGGAGCGCAGCTTCGGAGAAGAACAAGGTGAAAATAAGGAGGAAGCTAAGAGAACCAAGGTTTTGTTTTCAAACAAGAAGCGATGTAGATGTGCTTGATGATGGTTACAAATGGAGGAAGTATGGCCAGAAAGTTGTCAAGAATAGCCTTCATCCGAGAAGTTATTACCGTTGCACCCACAACAACTGCAGGGTGAAGAAGAGAGTTGAACGACTCTCAGAGGATTGTCGTATGGTGATAACAACCTATGAAGGAAGACACAATCACTCTCCTTGCGAGGACTCAAATTCATCGGAGCATGAATGCTTTACCTCTTTCTAG 639 0.4429 MEGERAAATNYDLQVSFSNTPQPIHELGFVHYEENQLLGFLSPSSQSQSLNSHVVVTSATTTAPTIGFMNHTKTWNNDQVQTLDPKPVDEENCTGNATEGNNNSWWRSAASEKNKVKIRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCEDSNSSEHECFTSF* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0940 212 Gene3D WRKY domain 124 198 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra4g0940 212 Pfam WRKY DNA -binding domain 139 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra4g0940 212 PANTHER WRKY TRANSCRIPTION FACTOR 12-RELATED 13 210 - -
Vra4g0940 212 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 13 210 IPR044810 GO:0003700
Vra4g0940 212 SUPERFAMILY WRKY DNA-binding domain 130 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra4g0940 212 SMART WRKY_cls 138 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra4g0940 212 ProSiteProfiles WRKY domain profile. 133 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0940 Vra-Chr4 16421008 16426803 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0940 3 212 WRKY Transcription Factor Family AT2G44745 58.182 1.04e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra4g0940 WRKY 1.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0940 - - gmx:100170677 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0940 4 16421008 16426803 Vra4g0940 4 16421008 16426803 ECH