Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0938 ATGCTCCTCTGTTACTCTCTTCATCTCCCAATACTATCTTCTTATTCACACAAATCAATCAGCGCTCCGAACACCGGCGGTTACATAAAGTTCCAAACCAGGTACCGCGAAAACCTCCGATACCTTCGAACGTTGACCATAATCGACCCCAAAACCAAACCGGAGGATCTCCCTCTCCCCAACGATGTCGACCACATCCTCCGCACTCTCACGTTCCTCAAGTCACGTTCCTTCTCCGACGCCGACATCCCCCGCCTCCACTACCTCACCCCTCAGCTCTTCTCCACCGCCGTTGTCCCCTCCGACGTCGCCGCGGTGTTCTCCTTCCTGGCCGACGAACTTCCAGCCACCGCGTCGGAGTCTCGCTATCTCATCCTCCGATGCCCCAAGCTGCTCTTCTCCCATGTCGACCTCTGTCTCCGACCCACGCTCCAATTTCTCCGCCAGATTGGCATCCAGGGGCTGAACAAGCCCACGACGCGGAACGCGCACTTACTGAACACGCGGGTGGATAAGCTGCATGCGAAGGTTGAGTTCTTGCAGGAATTAGGGTTTGAGTACGAGGATGCAGTGAAAGCATGTGCGAGGGTGCCGGCCATTTTTGGATATGACGCAGGGAACAATTTATGGCCAAAGTATGTGTATCTTGTGAAGGAAATGGAGAGGGATTTGGAAGAGTTGAAGAAGTTTCCTCAGTACTTTGGGTTCAGTTTGAAGGAGAGGATTGTGCCAAGGCACTTGCATTTGAAGGAAAGGGGTGTTAGGATTCCCTTGAACAGAATGTTGATGTGGGGTGATGAAAAGTTTTACAAGAACTGGAAGTGA 825 0.5236 MLLCYSLHLPILSSYSHKSISAPNTGGYIKFQTRYRENLRYLRTLTIIDPKTKPEDLPLPNDVDHILRTLTFLKSRSFSDADIPRLHYLTPQLFSTAVVPSDVAAVFSFLADELPATASESRYLILRCPKLLFSHVDLCLRPTLQFLRQIGIQGLNKPTTRNAHLLNTRVDKLHAKVEFLQELGFEYEDAVKACARVPAIFGYDAGNNLWPKYVYLVKEMERDLEELKKFPQYFGFSLKERIVPRHLHLKERGVRIPLNRMLMWGDEKFYKNWK* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0938 274 PANTHER TRANSCRIPTION TERMINATION FACTOR MTEF1, CHLOROPLASTIC 15 274 - -
Vra4g0938 274 Gene3D Transcription termination factor 3, mitochondrial 56 274 IPR038538 -
Vra4g0938 274 PANTHER CGI-12 PROTEIN-RELATED 15 274 IPR003690 GO:0003690|GO:0006355
Vra4g0938 274 Pfam mTERF 125 269 IPR003690 GO:0003690|GO:0006355
Vra4g0938 274 SMART mt_12 191 223 IPR003690 GO:0003690|GO:0006355
Vra4g0938 274 SMART mt_12 156 186 IPR003690 GO:0003690|GO:0006355
Vra4g0938 274 SMART mt_12 224 255 IPR003690 GO:0003690|GO:0006355
Vra4g0938 274 SMART mt_12 122 153 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0938 Vra-Chr4 16406857 16408383 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vra4g0938 mTERF 1.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0938 K15032 - gmx:100812333 487.648