Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0931 ATGCCTCCGAGGGTAGTGAAGAGAGGCGCTGCAGCGAAGAGGGCGTCGAGAGGATCCTCGAAGGCTGCACCTGATAACCAGCGTGAGCCAGAAACTGCTGAAGTGGAGGCGAAAAATCATGCAGAAAATTCAGCTGTTGATGTTGGAATGGAAGAAAAACACTTTGACGTGGACCAAGAGCTTCCGGAAGCCCCAAATGGGTCGGCTAAGGTGGAAAACAATGAAGAGGAGGTTAAGGAGTCTATAGATGAATATGAAAAAGGTGAACATTTAGATTTAGAGGATAATTATCCTGAGTATGAAGCAGAGGATTATGGTGGTGTTGACTATGATGAAAAGGAAATTGAACAAGATGGTCAGGATGAGGCAGATGAAGTAGAGGAAGAACCTGAAGAGATTATAGGTGACGAAGAGGGTGATACAGGTGATGAAGAAGTTGAATATGTTTACGAAGAAGTTGAGGATGATGATGATGGTGAACATGTTGGTGAGGAGCATGAGCATGCCCAGGTGCCCGACGTGGTGGAAGAGGAACACCGCAAAGTTGTAAAGGAGAGGCGAAAGCGTAAGGAATTTGAAGTATTTGTCGGGGGACTAGATAAGAATGCTACTGAGCATGACCTGAAGAAGGTTTTCAGCAAAGTTGGGGTAGTTACTGAAGTCAGGCTGATGATAAATCCCCAGACTAGAAGAAACAAGGGATTTGCATTCTTGCGTTTTGAAACTGTTGAGCAAGCAAAAAGAGCTGTGGTGGAGCTAAAAAATCCAGTGATTAATGGTAAACAATGTGGTGTTACTCCAAGTCAGGACAGTGATACTCTCTACTTAGGTAACATATGCAAGACTTGGAAAAAGGAAGCTTTGAAGGAGAAACTAAAACATTATGGAGTAGAAAATGTGGAGGATTTGACTTTAGTAGAAGATGATACCAACGAGGGGATGAACCGAGGATTTGCATTTTTAGAGTTTTCATCTCGTTCAGATGCTAAGGAAGCCTACAGGAGATTGCAAAAGAGAGATGTTGTGTTTGGAGTTGATAAGCCTGCGAAGGTTTCCTTTGCTGATTCCTTTATTGATCTGGGTGATGAAATTATGGCACAGGTTAAAACTGTATTTATTGATTCACTACCTCCGTCATGGGATGAAGATTATGTCCGGGATCTTCTCAAGAAATATGGAGAGATTGAAAAAATTGAGCTTGCTAGGAACATGCCAGCTGCACGCAGGAAGAACTATGGATTTGTTACATTTAGTACACATGCTGCTGCTGTGGAATGTGCTGATAGCATAACTAGTGCTGGGTTAGGTGAAGGTGACAGAAAGGCAAAAGTTAGGGCTAGATTATCACGGCCTCTTTCAAAACCTCTTCAGAGAGGCCATGGGAAACACAATAACCATGGGACAGACTTTCGTTCTCGCAACTCTGGAAGATTGGCAAGACCTTCACGTGGTCGACCTGCTCCATCTAGTTATCCTACCCGTGTGGTTAGAGGCATTGGAAGTCGTGCTCCACCAGTTAGACCTGTTAGTGTTAGAAGTAGACGTCCTGTCACATCCATGCTAGAAAGAGACAGGCCAGTTGCTCCTCCAGCTAGAACCTTTGAAAGGAGATTGACTGCTCCTGCATATTCAAAAAGTGGCATGAAAAGAGACTATAGTCGACGTGAGGATCTGCTGCCTCCAAGAAGCAGAGTTGCTGCAGATTATGGCTCTAGGATAGCATCTCAGAGGCACACATCTTATAGGGATTATCCTGCCCGTGGTTCTGACTACCCTGAGCTACATAGAAGTAGTTCTCGTGCTGCACCAAAGAGGGGTTATGTTGATGATGGCTATGGCCAAAGATTTGAGAGGCCTCCTCCTCCCCATCTAAGTTATCGAGAAGGACGACCCCGTGACTATGAATCTATAGCTGGCTCAAAACGTCCTTATACTGCTATAGATGATGTTCCTCCACGGTATGATACTGGTGCTCGCCAATCAAGATCCCGTTTAGATTATGAATATGGAAGTAGTGCTCCACAGTATGGAGATGCTTATCGTGATAGACTTGCAAGATCTAGTCTGGGATATAGTGGCAGCAGAACTTCCATTTCCAGTCAAGAATTACATGGGACGTATGGCAGTCGACAGGGCATAAGTTATGGTGGAGGTTCTTTTGGTGGTAGTGATGGTGGTATGTACACATCAAGTTATGGTGGTGATTACGAATCTCGTGGAAGTGATGTTGGAGGCCGCTCATATTCATCCATGTACTCTGGTAGAGGTGTGGGTGGCGGTAGCAGCAGCTATATGGGTGGTGGCGGCGGCTCTGGGTCTTATTATTGA 2328 0.4489 MPPRVVKRGAAAKRASRGSSKAAPDNQREPETAEVEAKNHAENSAVDVGMEEKHFDVDQELPEAPNGSAKVENNEEEVKESIDEYEKGEHLDLEDNYPEYEAEDYGGVDYDEKEIEQDGQDEADEVEEEPEEIIGDEEGDTGDEEVEYVYEEVEDDDDGEHVGEEHEHAQVPDVVEEEHRKVVKERRKRKEFEVFVGGLDKNATEHDLKKVFSKVGVVTEVRLMINPQTRRNKGFAFLRFETVEQAKRAVVELKNPVINGKQCGVTPSQDSDTLYLGNICKTWKKEALKEKLKHYGVENVEDLTLVEDDTNEGMNRGFAFLEFSSRSDAKEAYRRLQKRDVVFGVDKPAKVSFADSFIDLGDEIMAQVKTVFIDSLPPSWDEDYVRDLLKKYGEIEKIELARNMPAARRKNYGFVTFSTHAAAVECADSITSAGLGEGDRKAKVRARLSRPLSKPLQRGHGKHNNHGTDFRSRNSGRLARPSRGRPAPSSYPTRVVRGIGSRAPPVRPVSVRSRRPVTSMLERDRPVAPPARTFERRLTAPAYSKSGMKRDYSRREDLLPPRSRVAADYGSRIASQRHTSYRDYPARGSDYPELHRSSSRAAPKRGYVDDGYGQRFERPPPPHLSYREGRPRDYESIAGSKRPYTAIDDVPPRYDTGARQSRSRLDYEYGSSAPQYGDAYRDRLARSSLGYSGSRTSISSQELHGTYGSRQGISYGGGSFGGSDGGMYTSSYGGDYESRGSDVGGRSYSSMYSGRGVGGGSSSYMGGGGGSGSYY* 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0931 775 MobiDBLite consensus disorder prediction 1 99 - -
Vra4g0931 775 Gene3D - 273 355 IPR012677 -
Vra4g0931 775 MobiDBLite consensus disorder prediction 571 663 - -
Vra4g0931 775 Coils Coil 68 88 - -
Vra4g0931 775 SUPERFAMILY RNA-binding domain, RBD 270 428 IPR035979 GO:0003676
Vra4g0931 775 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 371 428 IPR000504 GO:0003723
Vra4g0931 775 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 274 340 IPR000504 GO:0003723
Vra4g0931 775 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 262 IPR000504 GO:0003723
Vra4g0931 775 MobiDBLite consensus disorder prediction 70 95 - -
Vra4g0931 775 MobiDBLite consensus disorder prediction 435 516 - -
Vra4g0931 775 MobiDBLite consensus disorder prediction 27 60 - -
Vra4g0931 775 CDD RRM_SF 371 445 - -
Vra4g0931 775 Gene3D - 101 272 IPR012677 -
Vra4g0931 775 MobiDBLite consensus disorder prediction 621 637 - -
Vra4g0931 775 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 369 449 IPR000504 GO:0003723
Vra4g0931 775 SMART rrm1_1 273 352 IPR000504 GO:0003723
Vra4g0931 775 SMART rrm1_1 370 445 IPR000504 GO:0003723
Vra4g0931 775 SMART rrm1_1 193 266 IPR000504 GO:0003723
Vra4g0931 775 MobiDBLite consensus disorder prediction 115 139 - -
Vra4g0931 775 PANTHER RNA RECOGNITION MOTIF 1 775 - -
Vra4g0931 775 Gene3D - 361 485 IPR012677 -
Vra4g0931 775 MobiDBLite consensus disorder prediction 588 603 - -
Vra4g0931 775 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 272 356 IPR000504 GO:0003723
Vra4g0931 775 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 775 - -
Vra4g0931 775 SUPERFAMILY RNA-binding domain, RBD 187 270 IPR035979 GO:0003676
Vra4g0931 775 MobiDBLite consensus disorder prediction 731 775 - -
Vra4g0931 775 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 270 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0931 Vra-Chr4 16360657 16366146 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0931 187 455 Eukaryotic Initiation Factors Gene Family AT1G49760 24.183 8.88e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0931 - - gmx:100811387 1132.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0756 9 8673161 8678790 Vra4g0931 4 16360657 16366146 PCT