Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0921 ATGGCTGCATGTTGCCCACTTTATTTGTCTCTCTCTTTCCCTTCCAACCTCATCCCATTAATCCATTTTCTCTGCAGTACTCAATTCATATCCCTTTGTTTTTCTATTCGTTTTCAGAGCTTTGTGTGTATGGCCGGCATAGACTTGGGTTCAGCATCGCATTTTCTTCATCATCGCCTTCAACGCCCTGACCTTGAAGACGATGACAACCAACACGACCAAGACAACAACAATAACAACACCAACGTTAACAATCACGAAGGACTTGAGCTAGTTACCACAAATCAAGGTCCCGGTGATATTGTCGCTCGCAGGCCAAGAGGCAGACCACCCGGTTCAAAGAACAAGCCTAAGCCACCTGTTATCATCACAAGAGAGAGTGCAAATACGCTTAGGGCTCACATCCTTGAAGTCAGCAGTGGCTGTGATGTCTTTGACTCCGTCGCTACCTACGCAAGGAAGCGCCAAAGAGGGATCTGTGTCCTCAGTGGGAGTGGCACCGTCACCAATGTCACGCTCCGCCAGCCGGCCGCAGCCGGCGCCGTTGTCACGCTTCACGGAAGGTTTGAGATCCTGTCTTTGTCGGGATCATTCCTTCCACCTCCTGCTCCACCCGGTGCCACCAGTTTGACCGTGTTTCTTGGTGGAGGACAGGGCCAGGTTGTGGGCGGAAACGTTGTCGGTCCCTTGGTGGCTTCTGGGCCTGTTATTGTTATTGCTTCATCTTTTACTAATGTAGCATACGAGAGGTTGCCTTTGGATGAAGAAGAATCTATGCAGATGCAACAGGGACAATCATCTGGTGGTGGTGGTGGTGGTAGCGGCGGTGGAGTCAGTAATAACTCTTTTCCTGACCCTTCTTCAGGGCTTCCATTCTTCAATTTGCCCTTAAACATGCCTCAGTTACCTGTTGATGGTTGGGCTGGAAATTCTGGTGGAAGGCAATCTTACTGA 954 0.499 MAACCPLYLSLSFPSNLIPLIHFLCSTQFISLCFSIRFQSFVCMAGIDLGSASHFLHHRLQRPDLEDDDNQHDQDNNNNNTNVNNHEGLELVTTNQGPGDIVARRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVSSGCDVFDSVATYARKRQRGICVLSGSGTVTNVTLRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTVFLGGGQGQVVGGNVVGPLVASGPVIVIASSFTNVAYERLPLDEEESMQMQQGQSSGGGGGGSGGGVSNNSFPDPSSGLPFFNLPLNMPQLPVDGWAGNSGGRQSY* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0921 317 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 44 317 - -
Vra4g0921 317 Pfam Plants and Prokaryotes Conserved (PCC) domain 132 245 IPR005175 -
Vra4g0921 317 MobiDBLite consensus disorder prediction 256 295 - -
Vra4g0921 317 Gene3D - 131 265 - -
Vra4g0921 317 CDD DUF296 132 207 IPR005175 -
Vra4g0921 317 SUPERFAMILY AF0104/ALDC/Ptd012-like 128 261 - -
Vra4g0921 317 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 44 317 IPR014476 GO:0003680
Vra4g0921 317 MobiDBLite consensus disorder prediction 258 288 - -
Vra4g0921 317 MobiDBLite consensus disorder prediction 64 121 - -
Vra4g0921 317 MobiDBLite consensus disorder prediction 75 92 - -
Vra4g0921 317 ProSiteProfiles PPC domain profile profile. 128 265 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0921 Vra-Chr4 16275948 16277380 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0921 44 317 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 61.039 5.94e-97 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0921 - - vra:106758954 553.518