Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0907 ATGGTTGAGGGTAGCCAAGTTTTCAGTTCTCATGTTATTGTTAGTTTCTTTCTGCTGGTTTTCTGTGGCATGGTTTGTGGGACTGATAGTGATATATCCTGCTTGAAAAGTGTAAAGGAAGCACTTCAGGACCCTTTCAAGTATTTGCAATCCTGGGATTTCAGCAACAAAACAGAAGGGAGTATATGCAAGTTCACTGGGGTTGAGTGTTGGCACCCTGATGAGAACAGGGTCTTGAATCTGAAACTGTCGAACATGGGACTCAAGGGTGAGTTTCCACGCGGCATTAAAAATTGCTCAAGCATGACAGGATTAGACTTTTCACTTAACAGACTCTCTAACACCATTCCAGCAGATATATCCACACTTCTTACATATGCGACATCCATTGATCTATCCTCAAATGACTTTACAGGGGAAATACCTGCTTCCCTCTCAAACTGTACCTATCTCAATACTCTCAGACTTGATCAAAACCAACTCTCTGGTCAAATTCCTTCAAACTTGAGCCAGCTCCCGCGGCTTAAGGCTTTTAGTGTTTCCAATAATCTTTTGACAGGGCCGGTTCCAGCCTTTAAAGCAGGTGTGGCTGATGCAGGAAGTTATGCAAATAATTCTGGCCTGTGTGGTGGTCCCTTGGATGCTTGCCATGCCAACTCTGCAAAGAGTAACACTGCTGTTATAGCTGGAGCAGCTGTTGGTGGTGTGACAGTTGCAGCATTAGGTTTGGGCATTGGAATGTTCTTCTACGTGCGCCGTATTTCTTATAGGAAGAAGGAAGAGGACCCTGAAGGAAACAAGTGGGCAAGAAGTCTAAAGGGAACCAAAACAATAAAGGTTTCTATGTTTGAGAAGGAAATTTCAAAAATGAACTTGAATGATCTCATGAAGGCAACTAATAACTTCAGTAATAGCAATATTATTGGGACTGGAAGATCAGGAACTGTTTACAAAGCTGTCCTTCCTGATGGCACATCACTCATGGTTAAGAGATTGCAGGAATCTCAACACTCAGAGAAAGAATTTATGTCTGAGATGGCTATACTAGGGACTGTCAAACATCGTAACCTGGTTCCTCTTTTAGGTTTTTGTCTGGCTAAAAGGGAGAGGCTTTTGGTCTATAAAAATATGCCAAATGGTACCCTCCATGATCAACTTCATCCTGAGGCAGGCGCGTGCACCATGGATTGGGCTGTAAGGCTCAAAATTGCAATTGGCGCAGCCAAAGGGTTGGCATGGCTTCATCATAGCTGCAATCCCCGTATTCTCCATCGAAACATAAGCTCTAAGTGCATCTTGTTGGATGCTGATTTTGAGCCCAAAATTTCTGATTTTGGTCTTGCTAGATTGATGAACCCAATTGATACACATTTGAGTACTTTTGTGAATGGGGAGTTTGGGGATTTGGGTTATGTTGCTCCTGAATATACAAAAACTTTGGTGGCTACTCCTAAAGGGGATATTTATAGCTTTGGGACCGTGCTTCTTGAGCTGGTGACAGGTGAAAGACCTACTCATGTGGCTAAAGCTCCGGAAACTTTCAAGGGAAATTTGGTTGAATGGATTTCACAGCAATCTAGCAATGCAAAACTCCATGCTGTCATTGATGAATCATTACTTGGGAATGGAGTAGACCAGGAAGTTTTCCAATTTCTGAAGGTTGCATGCAATTGTGTTTCAGAAATGCCAAAGGAGAGGCCTACCATGTTTGAAGTATACCAGCTTCTAAGAGCCATTGGCTTGAATTATAATTTCACTGTTGAGGATGAGATAATGCTGCCTGTAGACTCTGGTGACGCTGAGAACTTAGAAGAACTTATTGTAGCTCGAGAGGGACATAACTGA 1845 0.4266 MVEGSQVFSSHVIVSFFLLVFCGMVCGTDSDISCLKSVKEALQDPFKYLQSWDFSNKTEGSICKFTGVECWHPDENRVLNLKLSNMGLKGEFPRGIKNCSSMTGLDFSLNRLSNTIPADISTLLTYATSIDLSSNDFTGEIPASLSNCTYLNTLRLDQNQLSGQIPSNLSQLPRLKAFSVSNNLLTGPVPAFKAGVADAGSYANNSGLCGGPLDACHANSAKSNTAVIAGAAVGGVTVAALGLGIGMFFYVRRISYRKKEEDPEGNKWARSLKGTKTIKVSMFEKEISKMNLNDLMKATNNFSNSNIIGTGRSGTVYKAVLPDGTSLMVKRLQESQHSEKEFMSEMAILGTVKHRNLVPLLGFCLAKRERLLVYKNMPNGTLHDQLHPEAGACTMDWAVRLKIAIGAAKGLAWLHHSCNPRILHRNISSKCILLDADFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYTKTLVATPKGDIYSFGTVLLELVTGERPTHVAKAPETFKGNLVEWISQQSSNAKLHAVIDESLLGNGVDQEVFQFLKVACNCVSEMPKERPTMFEVYQLLRAIGLNYNFTVEDEIMLPVDSGDAENLEELIVAREGHN* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0907 614 SUPERFAMILY L domain-like 29 194 - -
Vra4g0907 614 Pfam Protein tyrosine and serine/threonine kinase 305 575 IPR001245 GO:0004672|GO:0006468
Vra4g0907 614 Pfam Leucine rich repeat N-terminal domain 29 71 IPR013210 -
Vra4g0907 614 Gene3D Phosphorylase Kinase; domain 1 263 375 - -
Vra4g0907 614 Gene3D Transferase(Phosphotransferase) domain 1 377 591 - -
Vra4g0907 614 ProSiteProfiles Protein kinase domain profile. 302 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0907 614 Gene3D Ribonuclease Inhibitor 28 218 IPR032675 -
Vra4g0907 614 PANTHER LRR RECEPTOR-LIKE KINASE 6 591 - -
Vra4g0907 614 SUPERFAMILY Protein kinase-like (PK-like) 279 577 IPR011009 -
Vra4g0907 614 PANTHER RECEPTOR-LIKE PROTEIN 55 6 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0907 Vra-Chr4 16144398 16147378 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0907 18 590 Receptor kinase-like Gene Family AT3G28450 45.250 4.02e-179 519
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Vra4g0907 PK_Tyr_Ser-Thr 1.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0907 - - gmx:100817267 1070.46