Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0905 ATGGAGGATTCATGGCATAGCTTGGTTTCTCAATGGGAAATGGATGATTTCTTCAACCAAAGCCACATGGTCCATTGCAATGAAGATGAGTCTCTGAAAGACATTATTGTTTTCTCTCCCGAAAGCAATATTCCATCTTCTTCCTCCCTCCAAAGTAACTTCAACTCCAAAACTTCATCATTTTCTGCTGCCCATGTTTTCTGTTTTGATAACCCTAATTCTGAAGCACATCAGAACCACCCTTCCAAAAGCACCACACAGAGCCAAAACGCGATCTCTAGAGCAGACAGACAACATCACATATTGGCTGAGAGAAAAAGGAGAGAAGAATTGACGAATAACATCGTAGAACTTTCCGCCATCATTCCTGGGTTAAAGAAGATGAATGACGAATATAGCATGACGATTGATGACCTAATAAAAGCAGTTGGAGGATGCTTATTGAATTTGAAGTCACAGAAGGTGTTAAAGTGA 474 0.403 MEDSWHSLVSQWEMDDFFNQSHMVHCNEDESLKDIIVFSPESNIPSSSSLQSNFNSKTSSFSAAHVFCFDNPNSEAHQNHPSKSTTQSQNAISRADRQHHILAERKRREELTNNIVELSAIIPGLKKMNDEYSMTIDDLIKAVGGCLLNLKSQKVLK* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0905 157 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 94 136 IPR036638 GO:0046983
Vra4g0905 157 MobiDBLite consensus disorder prediction 72 95 - -
Vra4g0905 157 PANTHER BHLH TRANSCRIPTION FACTOR 28 129 - -
Vra4g0905 157 Pfam Helix-loop-helix DNA-binding domain 97 125 IPR011598 GO:0046983
Vra4g0905 157 Gene3D - 77 155 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0905 Vra-Chr4 16129351 16132175 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0905 83 143 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 48.387 7.20e-10 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra4g0905 HLH 0.0002 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0905 - - vra:106758431 296.204