Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0904 ATGGAGGATTCATTGGAGAACTGGATTTCCGATCTGTTGTCGCAGGAAATGGAAGACTATGATGCATTTGATGAGGAACAGTTCCTGAGAGAGATCCTTGAGGAGCCACAGAATTTGTCACCTGAAGGAGAGAATAACAGTCCCAGCAACAGCAGTGTGTCATTTGATGAGGCAATTGGTGAAACTCTGCAGAAAAGCTACAGTTCCAACTCCATCAAGTCCTTGAAAACATCACCACCATCATCATCATCAGCATACCTTCTCTCTTTTGATACTTCAACTGCTGAGCCAATCGCAAAAGCTAAGCCTTCTGCAAAGCTTGGTTCATCACTGAAGGGATCTTGCAGTAAAAGGGGTGGTGCTATGGTGAAAGATGGATCTCAGTTTGAACCGGCCATGGCTCAGCCAAGAAAGAGGGTTAGAAGGTCTCGTGAGACACAGCATCACATCATTGCTGAGAGGAAAAGGAGACAGGAACTCACAGGGAGCATCATAGCACTTTCAGCCACCATTCCTGGACTCAAGAGGATGGACAAGGCTTACGTACTCCGTGAAGCAGTGAATTACACAAGACAACTTCAAGAGAGAGTGAAAGAGTTGGAAAATAAAAACAGTGAGAAAAGAGTAGTACATCATTCATCAACATTGGTAAGAAAATGTGAAGTTTCCGAAAAGAAAAACTTGAGCAATAGCAGTGAAAGCAACAAAGAATCACTGTTTGAGGTTGAAGCAAGAGTCCTAGATGAGGAAATACTGATTGGAATCCATTGTGAGAAGCAAAAGGACATAGTCTGCAACATACTGGCCTTTCTTGAAAAGCTGCATCTTTCTCCAACCAGTAGCAGTGTATTACCATTTGGCACTTGTACTCTTATAATCCACATCATTGCTCAGATGGATGAGGAATGCAGAATGAACATGGATGAGTTAGTGAAGAATCTGAGAGAATATCTGTTGGATGTGTATGACATGCAGCAAGTGCAAATTGAGTTCTTTGAGCTGCTAAAGTAG 1011 0.4263 MEDSLENWISDLLSQEMEDYDAFDEEQFLREILEEPQNLSPEGENNSPSNSSVSFDEAIGETLQKSYSSNSIKSLKTSPPSSSSAYLLSFDTSTAEPIAKAKPSAKLGSSLKGSCSKRGGAMVKDGSQFEPAMAQPRKRVRRSRETQHHIIAERKRRQELTGSIIALSATIPGLKRMDKAYVLREAVNYTRQLQERVKELENKNSEKRVVHHSSTLVRKCEVSEKKNLSNSSESNKESLFEVEARVLDEEILIGIHCEKQKDIVCNILAFLEKLHLSPTSSSVLPFGTCTLIIHIIAQMDEECRMNMDELVKNLREYLLDVYDMQQVQIEFFELLK* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0904 336 Coils Coil 183 210 - -
Vra4g0904 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 144 193 IPR011598 GO:0046983
Vra4g0904 336 MobiDBLite consensus disorder prediction 32 59 - -
Vra4g0904 336 PANTHER BHLH TRANSCRIPTION FACTOR 4 325 - -
Vra4g0904 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 212 IPR036638 GO:0046983
Vra4g0904 336 MobiDBLite consensus disorder prediction 39 59 - -
Vra4g0904 336 SMART finulus 150 199 IPR011598 GO:0046983
Vra4g0904 336 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 4 325 - -
Vra4g0904 336 MobiDBLite consensus disorder prediction 99 148 - -
Vra4g0904 336 Pfam Helix-loop-helix DNA-binding domain 147 194 IPR011598 GO:0046983
Vra4g0904 336 Gene3D - 136 209 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0904 Vra-Chr4 16122413 16126163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0904 134 318 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 45.789 2.80e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra4g0904 HLH 6.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0904 - - gmx:100818334 336.65