Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0877 ATGGTTTCCCTGTCAACCACCACCCCCTTTCTACCCTTCACTGCACAAAACGCTTCCACCAGAATCCTTTCTCCCAACACCTTCCGTTACACCAAGCACCGTCACAGGGATCACAGGAAGGTTGTGTGCGCCTGCATCGCACCTCCGCAGAACTTCAAGAGCCAGGACTCTTCCCCTGTTAATTTCAATGGTTTACACAAATCAGAACAGCTGAGCGCGGCGCGGGATCAGGATGATGATTCTGATGTTCTTATTGAGTGTAAAGATGTGTACAAATCTTTCGGGGAAAAGAAAATCTTAAATGGTGTCAGCTTCAAGATCAGGCACGGTGAAGCTGTTGGAATAATTGGTCCCTCTGGGACTGGTAAATCTACAGTTTTGAAGATTATAGCAGGACTTCTTGCCCCGGATAAGGGGGAAGTTTACATTCGAGGAAAAAAGAGGGTTGGTTTAGTAAGCGATGATAACCTATCTGGTCTTCGGATTGGATTAGTTTTCCAAAGTGCCGCACTCTTTGATTCTTTGTCTGTTCGTGAAAATGTTGGTTTTCTCTTGTATGAACACTCGAGTATGTCTGAGGACCAGATATCAGAGCTTGTCAAGGAAACCTTGGCTGCAGTTGGATTGAAGGGAGTTGAAGATCGGTTGCCTTCTGAATTATCAGGTGGGATGAAAAAGCGAGTTGCTTTAGCTCGATCTATTATCTGTGACACCACAAAGGAATCAATTGAGCCAGAGGTGCTTTTATATGACGAACCAACTGCTGGACTTGATCCTATTGCATCTACTGTTGTTGAGGATCTGATTCGCTCAGTGCACATAAAAGGACGAGATGCTCGTGGAAAACCTGGGAATATTGCATCTTATGTGGTTGTTACTCACCAACATAGTACCATTAAAAGAGCCATTGATAGATTGTTGTTTCTACACAAGGGAACGATTGTTTGGGAAGGAATGACTCATGAATTTACAACTACAACAAATCCAATTGTTCAGCAGTTTGCATCCGGCAGCCTAGATGGTCCTATCAAATATTAG 1038 0.4393 MVSLSTTTPFLPFTAQNASTRILSPNTFRYTKHRHRDHRKVVCACIAPPQNFKSQDSSPVNFNGLHKSEQLSAARDQDDDSDVLIECKDVYKSFGEKKILNGVSFKIRHGEAVGIIGPSGTGKSTVLKIIAGLLAPDKGEVYIRGKKRVGLVSDDNLSGLRIGLVFQSAALFDSLSVRENVGFLLYEHSSMSEDQISELVKETLAAVGLKGVEDRLPSELSGGMKKRVALARSIICDTTKESIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGRDARGKPGNIASYVVVTHQHSTIKRAIDRLLFLHKGTIVWEGMTHEFTTTTNPIVQQFASGSLDGPIKY* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0877 345 SMART AAA_5 109 313 IPR003593 -
Vra4g0877 345 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 24 345 - -
Vra4g0877 345 CDD ABC_Org_Solvent_Resistant 85 334 - -
Vra4g0877 345 Pfam ABC transporter 100 255 IPR003439 GO:0005524
Vra4g0877 345 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 24 345 - -
Vra4g0877 345 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 325 IPR027417 -
Vra4g0877 345 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 85 336 IPR003439 GO:0005524
Vra4g0877 345 ProSitePatterns ABC transporters family signature. 220 234 IPR017871 GO:0005524
Vra4g0877 345 Gene3D - 71 337 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0877 Vra-Chr4 15824626 15829127 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0877 84 314 Calmodulin-binding Proteins AT2G36910 30.041 8.01e-18 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0877 - - gmx:100783283 614.379