Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0876 ATGTTCAAATTCCTCAAAGAGGTCGTTGGTGGATCTGGAACCGGCCTCAAGGATCTACCGTATAACATAGCCGAACCTTTCCCTTCCGCCTGGGGCTCCTGGACTCACTCTCGCGGCACCTCCAAGGACGACGGTTCTCCTGTCTCTGTCTTTTCTCTCTCTGGCTCCAATGCTCAGGACGGTCACTTAGCTGCTGCGCGCAACGGCGTCAAGCGTCTTCGAACTGTTAGGCATCCGAATATATTGTCGTTTCTTCACAGCGCTGAGATTGAGACTTACGATGCAGGTTCGCCGAAGGTTACGATATATATTGTGACTGAACCTGTGATGCCGCTGTCTGAGAAAATCAAGGAGTTAGGGCTTGAAGGTACACAAAGGGATGAATATTATGCTTTGGGTCTTCATCAAATAGCTAAAGCTGTGAGCTTCTTGAATAATGATTGTAAACTTATTCACGGCAATGTTTGCTTGGCTAGTGTTGTTGTTACACCGACTTTGGACTGGAAGCTTCACGCTTTCGATGTTCTATCTGAGTTTGATGGGAGCAATGAAACATCTTCTGGTCAAATGCTGCAATATGCGTGGCTTGTTGGATCACAATACAAACCAATGGAGTTGGCAAAATCAGACTGGGATGCAATTAAGAAGTCTCCTCCATGGGCCATTGATTCCTGGGGCATGGGCTGCCTAATTTATGAGGTATTCTCTGGTCTGAGGTTGAGCAAGACAGAGGAGTTACGCAACACTGGTTCCATCCCCAAGTCTCTGCTTCCAGATTATCAACGACTATTGAGTTCCATGCCCTCCCGTAGATTAAACTCATCAAAGCTTATAGAAAATAGCGAATATTTTCAAAATAAGCTGGTAGACACTATACATTTCATGGAAATTCTCAGTTTGAAAGATAGTGTGGAGAGAGACACCTTCTTCCGCAAGCTTCCAAATTTAGCTGAGCAACTTCCTCGCCAGATAGTGTTGAAGAAGTTACTTCCTTTATTAGCTTCTGCCCTTGAATTTGGTTCAGCTGCTGCGTCAGCTTTGACTGCATTGTTGAAAATGGGTTCCTGGCTTTCGTCTGAGGAGTTTAACGTAAAGGTACTTCCTACAATAGTTAAATTATTTGCCTCCAATGATCGAGCTATTCGAGTTGGCCTTCTCCAACATATTGATCAGTATGGAGAGTCTTTATCACCACAAGTTGTTGATGAGCAAGTTTACCCTCATGTTGCTACTGGGTTTTCCGACACATCTGCTTTTCTCAGGGAATTGACTCTGAAGTCTATGTTAATTCTGGCTCCAAAGTTGTCTCAAAGGACCATCTCAGGATCATTATTGAAGTATTTGTCAAAGTTGCAGGTTGATGAAGAACCAGCAATTAGAACAAATACTACCATATTACTAGGCAACATTGGAAGTTACTTAAACGAGGGAACAAGAAAAAGAGTTTTGATCAATGCATTTACAGTTCGTGCATTGCGTGATACTTTTCCACCTGCTAGAGGAGCAGGTATTATGGCTTTGTGTGCCACCAGTTCCTACTATGACATCACTGAAGTTGCAACCCGGATTCTTCCTAATGTTGTTGTGCTCACAATTGATCCTGACAGTGATGTTAGGATTAAGGCGTTTCAAGCTGTTGATCAATTTTTGCAGATAGCCAAGCAACACTATGAAAAGACAAATGCATCAGATACCACTGGTGCTGCAAGTGTGGGAAGCTCATCTGTTCCAGGAAATGCTAGTTTGCTCGGATGGGCTATGAGCTCTTTGACCTTGAAGGGTAAACCTTCTGATCATGTTCCCGTTGCTTCTGCAAGTTCGACTGCAGTCACTTCAACAGCTTCTAATGGTACCACAGTCAGTGAGACGACAGCACCTGCCCGTGTAAGCTCCACAACAGATTTGGCTGAACACCCTGTCCCTACATCTCCTACATCAACGGATGGCTGGGGAGAACTTGAAAATGGAATTCAAGACGATCATGAAAGTGACAGGGATGGGTGGGATGAATTGGAACCACTTGAAGAGACAAAGCCAGCTCCAGCTCTTTCAAACATTCAAGCAGCACAAAGGCGGCCTGTTTCTCAACCTATTACACAGAAAAAACAAGCCTCAAATTCGCTGTCCAAAAGTACACCAAAATTGAACAAGGACGAGGACGATGATTTGTGGGGATCTATAGCAGCTCCTGCTCCAAAAACTGCGAGACCTTTAAATTTGAAAACAGCTCAAACCGATGATGACGATCCTTGGGCTGCCATTGCTGCTCCAGCACCCACTACTAAGGCCAAGCCGTTATCCACTGGCAGAGGTAGGGTGGCCAAACCTGCCGCTCCAAAATTAGGTGCTCAGCGGATAAACCGAACATCATCAGGCATGTAA 2382 0.4479 MFKFLKEVVGGSGTGLKDLPYNIAEPFPSAWGSWTHSRGTSKDDGSPVSVFSLSGSNAQDGHLAAARNGVKRLRTVRHPNILSFLHSAEIETYDAGSPKVTIYIVTEPVMPLSEKIKELGLEGTQRDEYYALGLHQIAKAVSFLNNDCKLIHGNVCLASVVVTPTLDWKLHAFDVLSEFDGSNETSSGQMLQYAWLVGSQYKPMELAKSDWDAIKKSPPWAIDSWGMGCLIYEVFSGLRLSKTEELRNTGSIPKSLLPDYQRLLSSMPSRRLNSSKLIENSEYFQNKLVDTIHFMEILSLKDSVERDTFFRKLPNLAEQLPRQIVLKKLLPLLASALEFGSAAASALTALLKMGSWLSSEEFNVKVLPTIVKLFASNDRAIRVGLLQHIDQYGESLSPQVVDEQVYPHVATGFSDTSAFLRELTLKSMLILAPKLSQRTISGSLLKYLSKLQVDEEPAIRTNTTILLGNIGSYLNEGTRKRVLINAFTVRALRDTFPPARGAGIMALCATSSYYDITEVATRILPNVVVLTIDPDSDVRIKAFQAVDQFLQIAKQHYEKTNASDTTGAASVGSSSVPGNASLLGWAMSSLTLKGKPSDHVPVASASSTAVTSTASNGTTVSETTAPARVSSTTDLAEHPVPTSPTSTDGWGELENGIQDDHESDRDGWDELEPLEETKPAPALSNIQAAQRRPVSQPITQKKQASNSLSKSTPKLNKDEDDDLWGSIAAPAPKTARPLNLKTAQTDDDDPWAAIAAPAPTTKAKPLSTGRGRVAKPAAPKLGAQRINRTSSGM* 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0876 793 MobiDBLite consensus disorder prediction 688 712 - -
Vra4g0876 793 SMART serkin_6 2 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0876 793 MobiDBLite consensus disorder prediction 654 676 - -
Vra4g0876 793 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 1 791 - -
Vra4g0876 793 ProSiteProfiles Protein kinase domain profile. 2 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0876 793 SUPERFAMILY ARM repeat 293 552 IPR016024 -
Vra4g0876 793 Gene3D Transferase(Phosphotransferase) domain 1 109 279 - -
Vra4g0876 793 MobiDBLite consensus disorder prediction 601 652 - -
Vra4g0876 793 Gene3D - 282 561 IPR011989 -
Vra4g0876 793 SUPERFAMILY Protein kinase-like (PK-like) 38 287 IPR011009 -
Vra4g0876 793 ProSiteProfiles HEAT repeat profile. 366 404 IPR021133 -
Vra4g0876 793 MobiDBLite consensus disorder prediction 596 793 - -
Vra4g0876 793 ProSiteProfiles HEAT repeat profile. 523 561 IPR021133 -
Vra4g0876 793 PANTHER - 1 791 - -
Vra4g0876 793 Gene3D Phosphorylase Kinase; domain 1 12 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0876 Vra-Chr4 15810763 15822087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0876 70 291 MAP Kinase Kinase Kinase AT5G66850 23.932 7.60e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK SCY1_SCYL1 Vra4g0876 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0876 K08876 - gmx:100789813 1393.64