Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0863 ATGGAGTTTCATCCTTACATTTACATTCTCTGCATAATTCTGTTCTTACAGATGTTTCCGGAATCTGCTAACTCTCAGCAAGCATACCTCAACAGCACTGTCTATGACTGCTCTGAGAACCCTTCTGCACCAAAAGGATACCTCTGCAATGGCCTTCAAAAGTCATGCACTTCCTTCTTAGTTTTCAGGTCCAAATCTCCCTATGACAACCCTGTAAGCATTGCCTACCTTTTTGGCTCTGAAGCATCTACCATAGCCTCAATAAACAACATCTCAAAAGATGACAAGATTCCTTCCAATAAGTCAATCATTGTTCCTGTATTCTGTTCATGTTCTGGAAATATCTACCAGCATATCACACCTTACACTGCCACCAAGAATGACACCTACTTCAAGTTGGTTACAGAAATTTACCAAGGCCTCACCACCTGCCAGGCCGTGATGGGTCAGAATTACTATGCCTCTGGTGCAATTATAGTTGGTGCTGAGCTCACAGTTCCAGTAGTATGTGCTTGTCCCACTGAAAATCAGACAGCAAGAGGGGTCACTTCCTTGCTGGTTTACTCAGTGAAAAATGGTGATACTGTTAAGTCCATTGGAGAGGCTTATGGTGTTGACCTACAAAGTATGCTAGAGGCCAACGGGTTGTCAGCGCCGCCAACTGCAGACAGCATCATAATCATCTATCCCACAACTCCTATCTTGGTTCCTCTCAGAGGGAAGAGTTGCAAAGAGGACCCTGGCAGTTTCTACTGTACTTGCTCCCAGGGAAGTGTTGAGGATGGAACCTTCATGGGGTTCCAATGTAATGAATCTGATGCTGAAAGTTTTCCTACCAAATTGGTTGCTTCGTTAGGTGTTGGACTTGGTTTAGGCTTTCTGTGTTTGTTTCTTCTGGGATACAAATCATATCAGTACATACAGAAGAAGAGAGAAAGTATCCGAAAGGAAAACCTTTTCAGGAAACCTACCAACATACTCTTAGACAGCAACTTCAGTGCCAAAGTGTCTGATTTTGGAACATCAAGATCAGTGCCACAAGATAAGACTCACTTGACCACAGCTATAGGAGGAACTTTTGGGTACATTGACCCTGAGTATTTTCAGTCTAGTAAGTTTTCAGATAAAAGTGATGTGTACAGTTTTGGGGTAGTGCTGGTAGAACTTATAAGTGGGAGAAAGCCAATTTCCTTCTTAGAGGAAGATGAGGGTCAGAATCTGATTGCAGAGTTTCTTTCTCTGATGAAGGAGAACAAAGTTTATGAGATTTTAGATGGCAGGGTTGTTAAGGAAGCAAGGAAAGATGAGATTCTTGCAATTGCAAACCTTGCAATGAGATGCTTGAGACTTAATGGGAAGAAAAGACCAACAATGAAAGAGGTTTCATTGGAACTAGAAGCATTGAGAAAGCTGCAAAGTTCCTTAGAGATCAGCCATGATCATGAGTATACAACTAGCGAGACAGCTCAAGAAATCACAGATGAAAGCATGCCACTGTTCTTAGAACTGGACTCCACATCCTTTTGA 1527 0.4231 MEFHPYIYILCIILFLQMFPESANSQQAYLNSTVYDCSENPSAPKGYLCNGLQKSCTSFLVFRSKSPYDNPVSIAYLFGSEASTIASINNISKDDKIPSNKSIIVPVFCSCSGNIYQHITPYTATKNDTYFKLVTEIYQGLTTCQAVMGQNYYASGAIIVGAELTVPVVCACPTENQTARGVTSLLVYSVKNGDTVKSIGEAYGVDLQSMLEANGLSAPPTADSIIIIYPTTPILVPLRGKSCKEDPGSFYCTCSQGSVEDGTFMGFQCNESDAESFPTKLVASLGVGLGLGFLCLFLLGYKSYQYIQKKRESIRKENLFRKPTNILLDSNFSAKVSDFGTSRSVPQDKTHLTTAIGGTFGYIDPEYFQSSKFSDKSDVYSFGVVLVELISGRKPISFLEEDEGQNLIAEFLSLMKENKVYEILDGRVVKEARKDEILAIANLAMRCLRLNGKKRPTMKEVSLELEALRKLQSSLEISHDHEYTTSETAQEITDESMPLFLELDSTSF* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0863 508 PANTHER LYSM TYPE RECEPTOR KINASE 26 321 - -
Vra4g0863 508 PANTHER LYSM TYPE RECEPTOR KINASE 322 496 - -
Vra4g0863 508 Pfam LysM domain 72 106 IPR018392 -
Vra4g0863 508 Pfam LysM domain 188 219 IPR018392 -
Vra4g0863 508 Pfam Protein kinase domain 322 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0863 508 ProSiteProfiles LysM domain profile. 186 230 IPR018392 -
Vra4g0863 508 CDD LysM 187 221 IPR018392 -
Vra4g0863 508 Gene3D LysM domain 173 246 IPR036779 -
Vra4g0863 508 ProSiteProfiles Protein kinase domain profile. 172 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0863 508 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 322 496 IPR045274 GO:0007166
Vra4g0863 508 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 26 321 IPR045274 GO:0007166
Vra4g0863 508 SUPERFAMILY Protein kinase-like (PK-like) 322 463 IPR011009 -
Vra4g0863 508 Gene3D Transferase(Phosphotransferase) domain 1 319 493 - -
Vra4g0863 508 SUPERFAMILY LysM domain 186 228 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0863 Vra-Chr4 15707163 15709567 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0863 322 469 Receptor kinase-like Gene Family AT1G16130 61.486 1.62e-54 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vra4g0863 Pkinase 3.2e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0863 - - vra:106758424 644.039