Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0862 ATGGAGCTTCTTCACAACCTCAACATTCTCACCACAGTTCTGCTCCTATGCATGTTCCCTCACTCACTCAAGTGCCAACAAGCATACCTCAATGACACTGTCTATGACTGTTCTGACAACCCTTCTGCACCAAAAGGCTACCTTTGCAATGGCCTTCGAAAGTCATGCACTTCCTTCTTACTTTTCAGGTCCAAACCTCCCTACGATAGCCCTGTCAGAATTGCCTACCTTCTTGGCTCTGAGGCATCTACCATAGCCTCAATCAACAACATCTCAAGAAATGACAAGATTGCTTCTAACAAGACAATCATTGTTCCTGTATTCTGTTCATGTTCAGGAAACATCTACCAGCACAACACACCTTACACTGCCAGCAAGAATGACACCTATTATCAGTTGGTAACAGAAACCTTCCAAGGTCTCACTACCTGTCAATCAATGATGGGTCAGAATTACTATGCAGCAACCAAAATTGCAATTGGTGCTGAGCTCACAGTTCCCTTGTTATGTGCTTGTCCAACTGAAAATCAGACAGCAAGAGGGGTCACCTCCTTGTTGGTTTACTTGGTGAACTATGGTGACACTATTGAATCCATAGGAAAGGCTTATGGTGTGGATGAACAAAGTATGCTTGAGGCCAATGAGTTGGCTATGCCACAAAGTAAAAACATAAACATGGATCTCCTTTCCTTGACACCTCTTTTAGTTCCTCTAATAGGGAAGAGCTGCAAAGAGAACCCAGATAAATTCTATTGTAAATGTTATCAAGCACCGGATGGAAGCTCTAAGGGGCCCTTCTGTGATGAGTCTGATGGTCAGAAATTCCCTGCTAAGTTGGTAGCCGCTTTAGGAGCAGGACTTGGTGTAGGCTTTCTGTGTTTGTTTCTTCTGGGATACAAATCATATCAGTACATACAGAAGAAGAGAGAACGTATCCGAAAGGAAAACTCTAGTAAGTTTTCAGATAAAAGTGATGTGTACAGTTTTGGGGTAGTACTTGTAGAGCTGATAAGTGGGAGAAAGCCAATTTCATTCTTTGAGGAAGATGAGGGTCAGAATCTGATTGCAGAGTTTCTTTCTCTGATGAAAGAGAACCAAGTTTATGAAATTTTAGATGAAAGGGTGGCTAAAGAAGCAATGAAAGATGACATTCTTGCCATTGGAAACCTTGCAATGAGATGCTTGAGACTTAATGGGAGGAAAAGGCCAACCATGAAGGAGGTTTCACTGGAATTAGAAGCATTGAGAAAGGTGCAAAGTTCCTTACAGATTAAACATGATAATGAGCACAAAACTAGTGATATGGTTCAAGAGTGCAGAGAGGAAAGCATGTCACTGTCCTTACAACTAGAGTCTACATCCTTATAG 1368 0.4189 MELLHNLNILTTVLLLCMFPHSLKCQQAYLNDTVYDCSDNPSAPKGYLCNGLRKSCTSFLLFRSKPPYDSPVRIAYLLGSEASTIASINNISRNDKIASNKTIIVPVFCSCSGNIYQHNTPYTASKNDTYYQLVTETFQGLTTCQSMMGQNYYAATKIAIGAELTVPLLCACPTENQTARGVTSLLVYLVNYGDTIESIGKAYGVDEQSMLEANELAMPQSKNINMDLLSLTPLLVPLIGKSCKENPDKFYCKCYQAPDGSSKGPFCDESDGQKFPAKLVAALGAGLGVGFLCLFLLGYKSYQYIQKKRERIRKENSSKFSDKSDVYSFGVVLVELISGRKPISFFEEDEGQNLIAEFLSLMKENQVYEILDERVAKEAMKDDILAIGNLAMRCLRLNGRKRPTMKEVSLELEALRKVQSSLQIKHDNEHKTSDMVQECREESMSLSLQLESTSL* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0862 455 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 26 315 IPR045274 GO:0007166
Vra4g0862 455 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 317 435 IPR045274 GO:0007166
Vra4g0862 455 Gene3D Transferase(Phosphotransferase) domain 1 296 442 - -
Vra4g0862 455 SUPERFAMILY Protein kinase-like (PK-like) 319 410 IPR011009 -
Vra4g0862 455 Pfam Protein tyrosine and serine/threonine kinase 317 410 IPR001245 GO:0004672|GO:0006468
Vra4g0862 455 Pfam LysM domain 188 218 IPR018392 -
Vra4g0862 455 Pfam LysM domain 69 106 IPR018392 -
Vra4g0862 455 PANTHER LYSM TYPE RECEPTOR KINASE 26 315 - -
Vra4g0862 455 PANTHER LYSM TYPE RECEPTOR KINASE 317 435 - -
Vra4g0862 455 CDD LysM 187 228 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0862 Vra-Chr4 15702045 15704566 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0862 13 246 Receptor kinase-like Gene Family AT2G23770 34.177 7.62e-43 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vra4g0862 PK_Tyr_Ser-Thr 3.9e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0862 - - vra:106758424 860.522