Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0861 ATGAGGGATCTTATGGCTAACTTTGTGATTCCACTTCCTTTCATGCTCTTCATTACTCATTGGTTTCTGTTGGCTCATCATGGCAGTGCTGCAGAGAGTTCCACATACATAGTACACATGGACAGATCCCTTTTTCCCACTGTCTTTTCAACTCATCATGATTGGTTTGAATCCACCGTTCAGTCCATAAAATCAGCAACACCTGCTCTCTCATNCANNCAATCACAGAAACAGATAGTGTACTCCTATAACCATGCCATGTATGGCTTCAGTGCAGTTCTAACATCACAAGAGTTAGAGGCTCTNAAGAACTCTCGTGGTTTTGTTGCAGCATATCCAGACAGAAATGTCACCATAGACACCACTCACACTTTTGAGTTTCTCTCCCTAGCCTCTTCCAGTGGNCTNTGGCANGCNTCNAATTTNGGGGAGGATGTCATTGTGGGTGTTNTTGACNCTGGTGTGTGGCCTGANAGTGAAAGCTTCAAAGATGATGGCATGACCAAGAAAATTCCAAGTAAATGGAAAGGAACCTGTCAGGAAGGGCAAGACTTCAACACTTCCATGTGCAACTTCAAACTGATCGGAGCTAGATATTTCAACAAAGGAGTGATTGCTAGAAACCCCAAGGTTAAAATCAGTATGAACTCAGCTAGAGATACAGAGGGTCATGGAACTCACACATCTTCCACAGTTGCTGGCAACTATGTCAGTGGAGCCTCTTACTTTGGCTACGCTAAAGGGGTGGCAAGAGGCATTGCACCAAGAGCTAGGCTTGCCATGTACAAGGTCATTTGGGAAGAGGGTCGTTACTCCTCTGATGTTTTGGCTGGAATGGACCAAGCCATTGCTGATGGGGTTGATGTCATTTCCATCTCTATGGGGTTTGATGGTNNTCCACTTTATGAGGATCCTATAGCAATAGCTTCTTTTGCAGCAATGGAAAAAGGGGTGTTGGTTTCATCCTCTGCAGGTAACAGTGGTCCTGATCTTGGTACTTTGCACAATGGAATCCCCTGGCTTCTGACCGTGGCTGCAGGTACCATTGACCGCACATTTGGTTCTCTAGTTCTTGGAAATGGCCGAACCATTATTGGTTCGACCATGTTTCCAGCAAATGCCTTGGTGGAAAATCTTCCACTTGTCTACTATAAGAATATATCAGCATGTAACTCAGTCAAGTTGTTATCGAAACTGGTAACAGATGTGATCATTGTATGTGACTTGGTTCCAGACACTAAGTTAATGTACAAGCAAATGTCGGTTGTTAATGAAGCTAGTTTGTCAGGGGCAGTGTTTTTTCTTGATGGTCCTTTGTTAAATGAATCAGGAATTGGGAGCTTTCCAGGTATTGTAATCAGTGCAAAGGATGCACCATCTGTGATCAAATATGCAAAAAGCCATAAGAATCCAACAGCCAGTATCAAATTTCAGCAAACATTTGTTGGAATAAAGCCAGCACCAGGTCTTGCTGATTACTCTTCAAGAGGTCCTTCACATAGCTACCCTGGGGTCTTGAAGCCTGACATAATGGCACCTGGCTCTAATGTCCTTGCTGCTTTCATTCCCGATTCTCCAGCAGCTGCAATTGGCAACAATGTGAACTTACCTACTGATTACAATTTGCTGTCTGGAACATCCATGGCCTGTCCTCATGCTTCTGGTGTTGCTGCTCTTCTGAAAGCTGCACATCCTGAATGGAGTGCTGCTGCTATAAGGTCTGCACTAGTAACCACAGCTAGTCCTCTAGATAATACACAAAATCCAATTAGAGACTATGGCTATCCTTCTCAATATGCTTCTCCTCTTGCCATGGGAGCTGGTCAAATTGACCCTAACAGAGCACTTGATCCAGGTTTGATATATGATGCCACCCCACAGGACTACGTTAATCTCCTTTGTGCTTCGAATTACACAATAAAGCAGATCTTAACCATTACAAGATCATCATCCTACACTTGCGCAAAACCATCTTTTGATCTTAACTACCCTTCATTTATAGGCATCTGTAACAACAAAACAATGTCAGTTGTCCAGAAATTTAGGAGGGAAGTGACGAATGTTGGAGCTGGTGTTGCCACATACAGAGCCAAGGTGACAGAACCTAAGGGGTCTGTGGTGACAGTGTCCCCTGAGACTTTGTCATTCAGATACAAAAATGAGAAGCTGAGCTACAGTGTTGTAATAAAGTACAACAAGTACAAGAAGGAAGATATCTCTTATGGGGATCTTATTTGGATTGAAGATGGTGGAGTACACAGTGTTAGGAGCCCCATTGTAGTGGCACCAAGTGGAATTGTTTGA 2304 0.4332 MRDLMANFVIPLPFMLFITHWFLLAHHGSAAESSTYIVHMDRSLFPTVFSTHHDWFESTVQSIKSATPALSXXQSQKQIVYSYNHAMYGFSAVLTSQELEALKNSRGFVAAYPDRNVTIDTTHTFEFLSLASSSGLWXASNXGEDVIVGVXDXGVWPXSESFKDDGMTKKIPSKWKGTCQEGQDFNTSMCNFKLIGARYFNKGVIARNPKVKISMNSARDTEGHGTHTSSTVAGNYVSGASYFGYAKGVARGIAPRARLAMYKVIWEEGRYSSDVLAGMDQAIADGVDVISISMGFDGXPLYEDPIAIASFAAMEKGVLVSSSAGNSGPDLGTLHNGIPWLLTVAAGTIDRTFGSLVLGNGRTIIGSTMFPANALVENLPLVYYKNISACNSVKLLSKLVTDVIIVCDLVPDTKLMYKQMSVVNEASLSGAVFFLDGPLLNESGIGSFPGIVISAKDAPSVIKYAKSHKNPTASIKFQQTFVGIKPAPGLADYSSRGPSHSYPGVLKPDIMAPGSNVLAAFIPDSPAAAIGNNVNLPTDYNLLSGTSMACPHASGVAALLKAAHPEWSAAAIRSALVTTASPLDNTQNPIRDYGYPSQYASPLAMGAGQIDPNRALDPGLIYDATPQDYVNLLCASNYTIKQILTITRSSSYTCAKPSFDLNYPSFIGICNNKTMSVVQKFRREVTNVGAGVATYRAKVTEPKGSVVTVSPETLSFRYKNEKLSYSVVIKYNKYKKEDISYGDLIWIEDGGVHSVRSPIVVAPSGIV* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0861 767 Gene3D - 633 763 - -
Vra4g0861 767 PANTHER OS01G0868800 PROTEIN 35 762 - -
Vra4g0861 767 CDD PA_subtilisin_like 355 475 - -
Vra4g0861 767 Gene3D Peptidase S8/S53 domain 145 629 IPR036852 GO:0004252|GO:0006508
Vra4g0861 767 Pfam Fibronectin type-III domain 660 761 IPR041469 -
Vra4g0861 767 Pfam Subtilase family 143 592 IPR000209 GO:0006508|GO:0008236
Vra4g0861 767 ProSitePatterns Serine proteases, subtilase family, serine active site. 545 555 IPR023828 -
Vra4g0861 767 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 35 762 IPR045051 -
Vra4g0861 767 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 24 119 IPR037045 -
Vra4g0861 767 Gene3D - 350 482 - -
Vra4g0861 767 SUPERFAMILY Subtilisin-like 121 620 IPR036852 GO:0004252|GO:0006508
Vra4g0861 767 CDD Peptidases_S8_3 117 581 IPR034197 -
Vra4g0861 767 PRINTS Subtilisin serine protease family (S8) signature 143 162 IPR015500 -
Vra4g0861 767 PRINTS Subtilisin serine protease family (S8) signature 220 233 IPR015500 -
Vra4g0861 767 PRINTS Subtilisin serine protease family (S8) signature 544 560 IPR015500 -
Vra4g0861 767 ProSiteProfiles Serine proteases, subtilase domain profile. 122 616 - -
Vra4g0861 767 Pfam Peptidase inhibitor I9 35 119 IPR010259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0861 Vra-Chr4 15689970 15692390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0861 31 764 Subtilisin-like Serine Gene Family AT5G67090 43.293 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0861 - - var:108328904 1290.79