Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0860 ATGTCAGAGTCTCCTTCTCCCTCCGTCTCCTTCTCCGACGGACCACCACCCTTGAACACCAACAACAATGGACTAGACATATTCACCAAGGTCTTCCTGTTGTTCATCTTTTTCACTCTCTTCGTTCGTGTCTGTTACGTGTACATGAACATGCGACGAGAACAAAACGGCAACGACAACGTAAGCAACAGCATCGCTTCCATGACCCATAACGATCAAAATGATAACCTCACCGGGCTACCCTATGACGTCATAAAGTCCTACCGCACTTTCCCTTACAGCAAAACCGATAGTGTTGTGGGAACAACATGCGACCACGACACCACCTGCGCCATATGTATTGAGGATTACGAGGAACCGGAGATGCTGAGGGTGTTGCCGCAATGCCGCCACTACTTTCACCGAGACTGCGTCGACGCATGGCTGAAGGTTAATGCCACGTGTCCCGTTTGCAGGAACTCGCTCATGGAAACTAGAAGCCATAATAATATTAACGATAACGCTGTCTTTAACAATGCCTTAGAACGTGTCTAA 534 0.4831 MSESPSPSVSFSDGPPPLNTNNNGLDIFTKVFLLFIFFTLFVRVCYVYMNMRREQNGNDNVSNSIASMTHNDQNDNLTGLPYDVIKSYRTFPYSKTDSVVGTTCDHDTTCAICIEDYEEPEMLRVLPQCRHYFHRDCVDAWLKVNATCPVCRNSLMETRSHNNINDNAVFNNALERV* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0860 177 SUPERFAMILY RING/U-box 109 161 - -
Vra4g0860 177 SMART ring_2 110 151 IPR001841 -
Vra4g0860 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 158 IPR013083 -
Vra4g0860 177 PANTHER RING-H2 FINGER PROTEIN ATL67 12 168 IPR044289 GO:0016567|GO:0016740
Vra4g0860 177 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 12 168 - -
Vra4g0860 177 Pfam Ring finger domain 109 152 IPR001841 -
Vra4g0860 177 CDD RING-H2_PA-TM-RING 109 152 - -
Vra4g0860 177 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0860 Vra-Chr4 15684007 15684540 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0860 24 166 C3H Transcription Factor Family AT5G07040 30.769 7.99e-21 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0860 - - vun:114182932 289.271