LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra4g0859	ATGTCCCCTTCAATTCCCTCTTCTCACATCACCCACCTTGGCCTTGGCTATTCCATCGCCATAGCCCTCGCCTTCCTCTTCCTCCTCTCTACCCTTCTCCTCTCCTCCTATCTCTGCTGCCGCGCCACCCGACACCGCACCCAAACAACCGCCGTCACAACCGCCGCCGCCAACCCCTCCGACGGCGTTGTCCTGCCACGTGTCATCTTCGTGGCGGAGGACGACGACGACGACGAGGAGGCCAGCGTTGCGCTGGGGCTCGACCAGAGCGTTATTAATTCCTACCCCAGGTTCCAGTTCGACAGGGACAACGCGCGGAATAGTAACGGGAATAACAACACGTGCTCCATATGTTTGTGCGAGTACAAGGATTCGGAGATGCTCAGGATGATGCCCGAGTGCCGCCATTTCTTCCACCTCTGTTGTCTCGATTCCTGGCTCAGACTCAGAGGCACCTGCCCTGTTTGCCGCAACTCGCCCCTCCCGACGCCGCTCTCCACGCCGCTGCAGGAGGTGGTGCCGCTCTCTCAGTACGCCGCCGATAGAAGGCGAAGTAGGTGA	561	0.6007	MSPSIPSSHITHLGLGYSIAIALAFLFLLSTLLLSSYLCCRATRHRTQTTAVTTAAANPSDGVVLPRVIFVAEDDDDDEEASVALGLDQSVINSYPRFQFDRDNARNSNGNNNTCSICLCEYKDSEMLRMMPECRHFFHLCCLDSWLRLRGTCPVCRNSPLPTPLSTPLQEVVPLSQYAADRRRSR*	187

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra4g0859	186	Pfam	Ring finger domain	113	157	IPR001841	-
	Vra4g0859	186	PANTHER	RING-H2 FINGER PROTEIN ATL67	6	184	IPR044289	GO:0016567\|GO:0016740
	Vra4g0859	186	ProSiteProfiles	Zinc finger RING-type profile.	115	157	IPR001841	-
	Vra4g0859	186	SUPERFAMILY	RING/U-box	114	162	-	-
	Vra4g0859	186	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	71	161	IPR013083	-
	Vra4g0859	186	PANTHER	RING-H2 FINGER PROTEIN ATL67	6	184	-	-
	Vra4g0859	186	SMART	ring_2	115	156	IPR001841	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra4g0859	Vra-Chr4	15673891	15674999	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra4g0859	1	176	C3H Transcription Factor Family	AT5G07040	43.750	7.68e-41	134

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra4g0859	-		-	gmx:100793332	234.187

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra4g0859	4	15673891	15674999	Vra9g0505	9	5349567	5351389	PCT