Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0859 ATGTCCCCTTCAATTCCCTCTTCTCACATCACCCACCTTGGCCTTGGCTATTCCATCGCCATAGCCCTCGCCTTCCTCTTCCTCCTCTCTACCCTTCTCCTCTCCTCCTATCTCTGCTGCCGCGCCACCCGACACCGCACCCAAACAACCGCCGTCACAACCGCCGCCGCCAACCCCTCCGACGGCGTTGTCCTGCCACGTGTCATCTTCGTGGCGGAGGACGACGACGACGACGAGGAGGCCAGCGTTGCGCTGGGGCTCGACCAGAGCGTTATTAATTCCTACCCCAGGTTCCAGTTCGACAGGGACAACGCGCGGAATAGTAACGGGAATAACAACACGTGCTCCATATGTTTGTGCGAGTACAAGGATTCGGAGATGCTCAGGATGATGCCCGAGTGCCGCCATTTCTTCCACCTCTGTTGTCTCGATTCCTGGCTCAGACTCAGAGGCACCTGCCCTGTTTGCCGCAACTCGCCCCTCCCGACGCCGCTCTCCACGCCGCTGCAGGAGGTGGTGCCGCTCTCTCAGTACGCCGCCGATAGAAGGCGAAGTAGGTGA 561 0.6007 MSPSIPSSHITHLGLGYSIAIALAFLFLLSTLLLSSYLCCRATRHRTQTTAVTTAAANPSDGVVLPRVIFVAEDDDDDEEASVALGLDQSVINSYPRFQFDRDNARNSNGNNNTCSICLCEYKDSEMLRMMPECRHFFHLCCLDSWLRLRGTCPVCRNSPLPTPLSTPLQEVVPLSQYAADRRRSR* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0859 186 Pfam Ring finger domain 113 157 IPR001841 -
Vra4g0859 186 PANTHER RING-H2 FINGER PROTEIN ATL67 6 184 IPR044289 GO:0016567|GO:0016740
Vra4g0859 186 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Vra4g0859 186 SUPERFAMILY RING/U-box 114 162 - -
Vra4g0859 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 161 IPR013083 -
Vra4g0859 186 PANTHER RING-H2 FINGER PROTEIN ATL67 6 184 - -
Vra4g0859 186 SMART ring_2 115 156 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0859 Vra-Chr4 15673891 15674999 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0859 1 176 C3H Transcription Factor Family AT5G07040 43.750 7.68e-41 134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0859 4 15673891 15674999 Vra9g0505 9 5349567 5351389 PCT