Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0848 ATGGGTGGCAATGGGAAGCACAGATGGAAAATCTCCTTCCACCGCTCCTCTTCCCAATCCTCTAAGCTCCCTCCCAAGGAATTTACGTGCCCCATTTCCGGCTCCTTAATGTTCGACCCGGTTGTCGTCGCTTCGGGTCAAACCTTCGAACGTCTCGCTGTTCAAGTCTGCAAGGACCTCAACTTCTCCCCCAAGCAAGAAGACGGCACCCGACCCGATTTCTCAACGGTAATCCCTAACTTAGCCCTCAAAACCACAATCCTCAATTGGTGCGATAAATCCCGCACCCAACACCCGCCCGCACCCGATTACGCCTCCCTCGAGGGCCTCGTCAGGCAAGCAATGGTTCTTTCAGTGGAACAAAACCAACAGGAAGAACGAGAAGAACGAATTAGGGTTTCCGAAAAGGAGCTTCTCAACGCGGTCCCTGATAACCCTCCCGTCATTTTCTCACACGCCGCCACTGAGTTAAGCCCCCGAGTTAACCACTTCAACTCGGGATCCTCCTCCGAGGAATCGGTCATCATTCTGCCCAGTCCGGGAACGCCGTTACCGTTTACTGTTCGTCCAACCTGCTTCTCCTCCTCCTCCTCCTTCGAGATTGAAATTGAAAACCCTAGCGCGCCGGTTTCGGAGGAAGAGGAAAGAATATTGAAGAAATTGAAGAGCAGCGAGGTGTTTGAGCAAGAGGAAGGTGTAATCGCGCTGAGGAAGATCACGAGGAGCAAAGTGGAGGCTAGGCTCTTGCTCTGCACGCCGCGGGTGCTGCTGGCGCTGCGCGGTTTGATCGCTTCGCGGTACGGCGTTGTTCAGGTCAACGCGGTGGCGTCTCTGGTCAACCTCTCGCTGGAGAAGCAGAACAAGGTAAAGATAGTGAGGTCGGGGTTTGTACCGTTTTTAATCGATGTTTTGAAGGGGGGATTGGATGAGTCGCAGGAGCACGCTGCGGGCGCGCTTTTCAGTTTAGCGTTGGATGATGATAATAAAATGGCCATTGGCGTTCTCGGCGCGTTGCAGCCGCTGGTACACTCGCTGCGTGCCGAGTCCGATAGGACTCGGCATGACTCGGCGCTCGCGTTGTATCATCTGAGCCTGGTTCAGAGTAACCGAGTGAAGCTGGTGAAACTCGGGGTGGTACCGACGCTTTTGTCCATGGTGGTGGCGGGGAACTTGGCGAGCCGAGTGCTGCTGATTCTGTGCAACCTGGCGGTTTGCACGGAGGGGCGCACGGCGATGCTGGACGCGAACGCGGTGGAGTGTCTGGTGGGGTTGTTGAGGACGAACGAGTTGGACTCAGAGGCGACTCGGGAGAATTGCGTGGCAGCGCTGTTCGCGCTGAGTCATAGGAGCTTGAGGTTCAAAGGGTTGGCGAAGGAGGCGAGGGTTGTGGAGGTTTTGAAGGAGGTTGAAAAAACGGGAACAGAGAGGGCCAGGGAGAAGGCCAGGAAGGTGTTGCACATGTTGAGAACTGTGGGCGATGGAGGTGATGATGAAGGTGACGAATTTTACGACTCGGTCGGGTTGACGCGGAACCGTTACCGAATTGGTGCTGGCAGGAACCACAACATCCTCAACACGACCACGTTTTAG 1590 0.5535 MGGNGKHRWKISFHRSSSQSSKLPPKEFTCPISGSLMFDPVVVASGQTFERLAVQVCKDLNFSPKQEDGTRPDFSTVIPNLALKTTILNWCDKSRTQHPPAPDYASLEGLVRQAMVLSVEQNQQEEREERIRVSEKELLNAVPDNPPVIFSHAATELSPRVNHFNSGSSSEESVIILPSPGTPLPFTVRPTCFSSSSSFEIEIENPSAPVSEEEERILKKLKSSEVFEQEEGVIALRKITRSKVEARLLLCTPRVLLALRGLIASRYGVVQVNAVASLVNLSLEKQNKVKIVRSGFVPFLIDVLKGGLDESQEHAAGALFSLALDDDNKMAIGVLGALQPLVHSLRAESDRTRHDSALALYHLSLVQSNRVKLVKLGVVPTLLSMVVAGNLASRVLLILCNLAVCTEGRTAMLDANAVECLVGLLRTNELDSEATRENCVAALFALSHRSLRFKGLAKEARVVEVLKEVEKTGTERAREKARKVLHMLRTVGDGGDDEGDEFYDSVGLTRNRYRIGAGRNHNILNTTTF* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0848 529 SMART arm_5 405 448 IPR000225 GO:0005515
Vra4g0848 529 SMART arm_5 325 365 IPR000225 GO:0005515
Vra4g0848 529 SMART arm_5 284 324 IPR000225 GO:0005515
Vra4g0848 529 PANTHER U BOX DOMAIN-CONTAINING 1 519 - -
Vra4g0848 529 MobiDBLite consensus disorder prediction 1 25 - -
Vra4g0848 529 CDD RING-Ubox 30 77 - -
Vra4g0848 529 Pfam U-box domain 25 94 IPR003613 GO:0004842|GO:0016567
Vra4g0848 529 SMART Ubox_2 27 90 IPR003613 GO:0004842|GO:0016567
Vra4g0848 529 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 100 IPR013083 -
Vra4g0848 529 SUPERFAMILY ARM repeat 216 488 IPR016024 -
Vra4g0848 529 Gene3D - 211 494 IPR011989 -
Vra4g0848 529 ProSiteProfiles U-box domain profile. 23 97 IPR003613 GO:0004842|GO:0016567
Vra4g0848 529 SUPERFAMILY RING/U-box 14 98 - -
Vra4g0848 529 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0848 Vra-Chr4 15571283 15574715 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0848 1 528 U-box Gene Family AT5G65200 56.206 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0848 - - gmx:100784564 845.884