Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0840 ATGTCTACCTCCTCAACCCACCACACCTATAGCCGAAAGCAGAAATCACTCGGCTTATTGTGCACCAATTTTCTCAGGCTATACAACAGAGATGGCGTCCGCTTAATTGGTCTCGATGACGCCGCATCGCGATTAGGTGTTGAGAGACGCCGGATCTACGACATCGTCAACGTCCTAGAGAGCGTCGGGGTGCTGGCCAGAAAAGCTAAGAATCAGTATACCTGGAAAGGCTTTTCTGCGATTCCCGAGGCTTTGCAAGAACTCAAGGAAGATGGTTTGAAAGAGAATCCTGGGTCTTTTGATGACTCCAATGACAGCGCGAAAGTGTCTGATGATGAGGATGAGGAGGAAACTTCTCCCATTGTCAATACTGAAAGTCAGAATGACAAGGAAATTCCTGATTCCACCGCTCTTGGTCTATCCTCTAAGAACGAAAACAGAAGGGAAAAGTCTCTGGCATTGCTTACTCAGAATTTTGTTAAGCTTTTTATCTGCTCTAGTATCGAAATGATCTCCCTTGACGAAGCTGCAAAGCTGTTGCTTGGAAATGCTAATACATCAATAATGAGGACTAAAGTCAGGCGCCTATATGATATTGCAAATGTGTTATCCTCCATGAACCTAATCGAGAAGACCCATACAACAAATACAAGAAAACCAGCATTTAGGTGGTTGGGTTGGAGAGGTAAAGCATGGAGTGAATCAGTTGACTTAGCTCACAATTCAAATTTCAATGAGCCAGGGAAAAGAAAATTTGGAACTGACATCACAAACACAAGTTTTAAAAGGAGCAAAACTGATTTTCTCTTGGATGGCCACACCTGTAAAATGCAAAATCAACAAGAAAATATCAGTTACAGAGTACAGCCCGACAGAAGCAACTTTGAAAAAGATGCAAAACAAACATCAAAGAGCTATCAGTTTGGTCCTTTCGCTCCAGCTTATGTGCCCAAAGTCGGAACCTCTGAAAATAGTAGCGGGAATCAGGTGCATGACTGGGACAGCCTCGCACAGGTTCATCGTCCTCAGTATCAAAACCAAGCTTTGAGAGATCTATTCTCTCATTACATGGATGCGTGGAAATCATGGTACTCTGAAGTTGCTGAGAAAAAGCCAACCAAAACCTTATAA 1131 0.4315 MSTSSTHHTYSRKQKSLGLLCTNFLRLYNRDGVRLIGLDDAASRLGVERRRIYDIVNVLESVGVLARKAKNQYTWKGFSAIPEALQELKEDGLKENPGSFDDSNDSAKVSDDEDEEETSPIVNTESQNDKEIPDSTALGLSSKNENRREKSLALLTQNFVKLFICSSIEMISLDEAAKLLLGNANTSIMRTKVRRLYDIANVLSSMNLIEKTHTTNTRKPAFRWLGWRGKAWSESVDLAHNSNFNEPGKRKFGTDITNTSFKRSKTDFLLDGHTCKMQNQQENISYRVQPDRSNFEKDAKQTSKSYQFGPFAPAYVPKVGTSENSSGNQVHDWDSLAQVHRPQYQNQALRDLFSHYMDAWKSWYSEVAEKKPTKTL* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0840 376 MobiDBLite consensus disorder prediction 93 144 - -
Vra4g0840 376 Pfam E2F/DP family winged-helix DNA-binding domain 149 226 IPR003316 GO:0005667|GO:0006355
Vra4g0840 376 Pfam E2F/DP family winged-helix DNA-binding domain 13 77 IPR003316 GO:0005667|GO:0006355
Vra4g0840 376 SUPERFAMILY "Winged helix" DNA-binding domain 11 75 IPR036390 -
Vra4g0840 376 SMART E2F_TDP_2 12 77 IPR003316 GO:0005667|GO:0006355
Vra4g0840 376 SMART E2F_TDP_2 147 226 IPR003316 GO:0005667|GO:0006355
Vra4g0840 376 PANTHER TRANSCRIPTION FACTOR E2F 4 367 IPR015633 GO:0000978|GO:0006357
Vra4g0840 376 Gene3D - 141 228 IPR036388 -
Vra4g0840 376 Gene3D - 7 79 IPR036388 -
Vra4g0840 376 SUPERFAMILY "Winged helix" DNA-binding domain 149 227 IPR036390 -
Vra4g0840 376 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 4 367 - -
Vra4g0840 376 MobiDBLite consensus disorder prediction 121 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0840 Vra-Chr4 15414681 15421158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0840 7 372 E2F-DP Transcription Factor Family AT3G48160 58.021 5.71e-129 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vra4g0840 E2F_TDP 2.1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0840 K09391 - gmx:100818090 545.043