Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0837 ATGGCTGCCGCCAGTGATGTTTTCATGCCGGAAGTGGGTTCCGGGAAACTCCACGTCCTTGCCGTTGATGACAGCCACGTCGACCGCAAGGTTATTGAGAGGTTGCTCAAAATCTCGTCTTGCAAAGTGACGGTAGTGGAAAGTGGAAGCAGGGCTCTGCAGTATCTGGGGTTGGATGGAGAGAAGAGCTCCATTGGTTTTGATAGTGTCAAGGTTAATTTGATAATGACAGACTACTCCATGCCGGGTATGACTGGATATGAACTGCTCAAGAAGATAAAGGAATCATCTGTGTTTAGAGAGGTTCCAGTTGTGGTTATGTCGTCTGAAAATATCTTGACTCGAATCGATAGTTGCCTGGAGGAAGGAGCAGAAGAGTTTCTGTTGAAACCTGTGAAGTTGTCAGATGTAAAACGCGTGACAGATTTCATCATGAAAGGTGAAGGGAAGAAAGGTCATAAAAGAAGCAGATCAGATGATTACAGCCCTCCATCATCATCATCATCATCTATTTCAACTGCGTTTTCATCAGTTTCTCATCCCTGTGATCTATCTTTGCCTGCATCACCTTCTGCATTGCTCTCAAAGAAAACCAGATTGAGCATATAG 609 0.4466 MAAASDVFMPEVGSGKLHVLAVDDSHVDRKVIERLLKISSCKVTVVESGSRALQYLGLDGEKSSIGFDSVKVNLIMTDYSMPGMTGYELLKKIKESSVFREVPVVVMSSENILTRIDSCLEEGAEEFLLKPVKLSDVKRVTDFIMKGEGKKGHKRSRSDDYSPPSSSSSSISTAFSSVSHPCDLSLPASPSALLSKKTRLSI* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0837 202 ProSiteProfiles Response regulatory domain profile. 18 145 IPR001789 GO:0000160
Vra4g0837 202 Gene3D - 16 175 - -
Vra4g0837 202 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR6 12 182 - -
Vra4g0837 202 SUPERFAMILY CheY-like 16 145 IPR011006 -
Vra4g0837 202 Pfam Response regulator receiver domain 19 138 IPR001789 GO:0000160
Vra4g0837 202 MobiDBLite consensus disorder prediction 161 179 - -
Vra4g0837 202 MobiDBLite consensus disorder prediction 148 179 - -
Vra4g0837 202 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 182 IPR045279 GO:0009736
Vra4g0837 202 SMART REC_2 17 141 IPR001789 GO:0000160
Vra4g0837 202 CDD REC_typeA_ARR 19 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0837 Vra-Chr4 15357967 15359998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0837 17 148 Response Regulator Gene Family AT5G62920 82.576 4.84e-76 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra4g0837 Response_reg 7.4e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0837 K14492 - gmx:100306152 306.605