Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0832 ATGCCTCTCTCCTCCGCCTCCGCCGCCGTCGCCCCTCACTCTGCCTCCTCCGCCGAGATCATGCTGTTCGGAGTCAGAGTCGTCGTGGACTCCATGAGGAAGAGCGTCAGCATGAACAACCTCTCCCAGTACGATCACCATCGCGATACCGCCGCTGCCAAAGACGACACCGTCGCCGCTGGCTACGCCTCCGCCGATGACGCCGCTCCGAACAACTCCGGAAAAAACCGTGACCGCAAGCGAGGGATTCCATGGACGGAGGAAGAGCACAAGCTGTTCTTGGTTGGGTTGCAGAAAGTGGGGAAAGGTGACTGGAGAGGAATCTCAAGGAACTATGTCAAGACACGGACACCAACTCAAGTTGCTAGCCATGCTCAAAAGTATTTTCTCCGCCGTACCAACCTCAATCGCCGTCGCCGTAGATCTAGCCTCTTCGACATAACCACCGATTCGGTCTCTACAACCCCAATGGAAGAAGGACAGATTCAGTATCAAGATAATTTGTCTCTTGTGCATCCCGTGTACCCTGTTACCGCTGAAGGAAGCAACATGAACGGATTTTCAAAGTTGCCTATGTATTCAAATGACATTGGTACTGGAGTTATGTCAGCTCAAGCTGGGAATCCAATGAAAATACTTACTTTGGGACAAGGAAATGTGGAGCAGAATGGGCCTAGTACTAAGCTAGTTTGTACAACAGCTCCTATTGTTCCAGATTATATAGGCTCCACAGCGTCTGATATCACTGCCACCAGTTTAAGTTCACTTGATCCACCAACACTGTCTCTCGGGTTATCTTTGTCATCTAGTCAAAGACAAACTTCATCAATACATTCAGCTTTTCATTCACTGTCGTGTTTCAACAATGGAGATAGCTTCATAACCGTTGCTTAG 894 0.4955 MPLSSASAAVAPHSASSAEIMLFGVRVVVDSMRKSVSMNNLSQYDHHRDTAAAKDDTVAAGYASADDAAPNNSGKNRDRKRGIPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRTNLNRRRRRSSLFDITTDSVSTTPMEEGQIQYQDNLSLVHPVYPVTAEGSNMNGFSKLPMYSNDIGTGVMSAQAGNPMKILTLGQGNVEQNGPSTKLVCTTAPIVPDYIGSTASDITATSLSSLDPPTLSLGLSLSSSQRQTSSIHSAFHSLSCFNNGDSFITVA* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0832 297 CDD SANT 84 129 IPR001005 -
Vra4g0832 297 Pfam Myb-like DNA-binding domain 84 129 IPR001005 -
Vra4g0832 297 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 16 297 - -
Vra4g0832 297 MobiDBLite consensus disorder prediction 63 83 - -
Vra4g0832 297 ProSiteProfiles Myb-like domain profile. 77 129 IPR001005 -
Vra4g0832 297 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 80 131 IPR006447 GO:0003677
Vra4g0832 297 SMART sant 81 131 IPR001005 -
Vra4g0832 297 Gene3D - 83 135 - -
Vra4g0832 297 ProSiteProfiles SANT domain profile. 85 133 IPR017884 -
Vra4g0832 297 SUPERFAMILY Homeodomain-like 79 133 IPR009057 -
Vra4g0832 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 133 IPR017930 -
Vra4g0832 297 PANTHER KIN2 16 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0832 Vra-Chr4 15275615 15278589 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra4g0832 Myb_DNA-binding 1.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0832 - - pvu:PHAVU_009G183300g 445.277